@@ -26,9 +26,9 @@ The image below presents the SPLASH pipeline on a high-level.
2626## Installation
2727### Precompiled binaries
2828The easiest way to get SPLASH is to use [ precompiled release] ( https://github.com/refresh-bio/SPLASH/releases ) .
29- To get version 2.1.14 and run the example, is is sufficient to do the following:
29+ To get version 2.3.0 and run the example, is is sufficient to do the following:
3030```
31- curl -L https://github.com/refresh-bio/SPLASH/releases/download/v2.1.14 /splash-2.1.14 .linux.x64.tar.gz | tar xz
31+ curl -L https://github.com/refresh-bio/SPLASH/releases/download/v2.3.0 /splash-2.3.0 .linux.x64.tar.gz | tar xz
3232cd example
3333./run-example.sh
3434```
@@ -38,14 +38,14 @@ It is possible to run splash using the docker container available through GitHub
3838
3939To pull the image run:
4040```
41- sudo docker pull ghcr.io/refresh-bio/splash:2.1.14 # replace version number if needed
41+ sudo docker pull ghcr.io/refresh-bio/splash:2.3.0 # replace version number if needed
4242```
4343Example of how to run splash with docker.
4444Prerequisites:
4545 * There is ` input.txt ` in the current directory
4646 * All input splash files defined in the ` input.txt ` are in the same or child directory
4747```
48- sudo docker run -v `pwd`:/home/ubuntu ghcr.io/refresh-bio/splash:2.1.14 splash input.txt
48+ sudo docker run -v `pwd`:/home/ubuntu ghcr.io/refresh-bio/splash:2.3.0 splash input.txt
4949```
5050
5151### Singularity container
@@ -54,16 +54,16 @@ In such a case docker container may be transformed into a singularity container
5454
5555To pull the singularity version of splash use:
5656```
57- singularity pull docker://ghcr.io/refresh-bio/splash:2.1.14 # replace version as needed
57+ singularity pull docker://ghcr.io/refresh-bio/splash:2.3.0 # replace version as needed
5858```
59- This will result in a ` splash_2.1.14 .sif ` file created in the current directory.
59+ This will result in a ` splash_2.3.0 .sif ` file created in the current directory.
6060To execute splash using this file run:
6161```
62- ./splash_2.1.14 .sif splash input.txt
62+ ./splash_2.3.0 .sif splash input.txt
6363```
6464It is also possible to run without pulling first:
6565```
66- singularity run docker://ghcr.io/refresh-bio/splash:2.1.14 splash input.txt
66+ singularity run docker://ghcr.io/refresh-bio/splash:2.3.0 splash input.txt
6767```
6868It may be necessary to configure bind for singularity (` -B ` parameter) depending on your configuration.
6969
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