@@ -26,9 +26,9 @@ The image below presents the SPLASH pipeline on a high-level.
26
26
## Installation
27
27
### Precompiled binaries
28
28
The easiest way to get SPLASH is to use [ precompiled release] ( https://github.com/refresh-bio/SPLASH/releases ) .
29
- To get version 2.1.14 and run the example, is is sufficient to do the following:
29
+ To get version 2.3.0 and run the example, is is sufficient to do the following:
30
30
```
31
- curl -L https://github.com/refresh-bio/SPLASH/releases/download/v2.1.14 /splash-2.1.14 .linux.x64.tar.gz | tar xz
31
+ curl -L https://github.com/refresh-bio/SPLASH/releases/download/v2.3.0 /splash-2.3.0 .linux.x64.tar.gz | tar xz
32
32
cd example
33
33
./run-example.sh
34
34
```
@@ -38,14 +38,14 @@ It is possible to run splash using the docker container available through GitHub
38
38
39
39
To pull the image run:
40
40
```
41
- sudo docker pull ghcr.io/refresh-bio/splash:2.1.14 # replace version number if needed
41
+ sudo docker pull ghcr.io/refresh-bio/splash:2.3.0 # replace version number if needed
42
42
```
43
43
Example of how to run splash with docker.
44
44
Prerequisites:
45
45
* There is ` input.txt ` in the current directory
46
46
* All input splash files defined in the ` input.txt ` are in the same or child directory
47
47
```
48
- sudo docker run -v `pwd`:/home/ubuntu ghcr.io/refresh-bio/splash:2.1.14 splash input.txt
48
+ sudo docker run -v `pwd`:/home/ubuntu ghcr.io/refresh-bio/splash:2.3.0 splash input.txt
49
49
```
50
50
51
51
### Singularity container
@@ -54,16 +54,16 @@ In such a case docker container may be transformed into a singularity container
54
54
55
55
To pull the singularity version of splash use:
56
56
```
57
- singularity pull docker://ghcr.io/refresh-bio/splash:2.1.14 # replace version as needed
57
+ singularity pull docker://ghcr.io/refresh-bio/splash:2.3.0 # replace version as needed
58
58
```
59
- This will result in a ` splash_2.1.14 .sif ` file created in the current directory.
59
+ This will result in a ` splash_2.3.0 .sif ` file created in the current directory.
60
60
To execute splash using this file run:
61
61
```
62
- ./splash_2.1.14 .sif splash input.txt
62
+ ./splash_2.3.0 .sif splash input.txt
63
63
```
64
64
It is also possible to run without pulling first:
65
65
```
66
- singularity run docker://ghcr.io/refresh-bio/splash:2.1.14 splash input.txt
66
+ singularity run docker://ghcr.io/refresh-bio/splash:2.3.0 splash input.txt
67
67
```
68
68
It may be necessary to configure bind for singularity (` -B ` parameter) depending on your configuration.
69
69
0 commit comments