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Description
Problem Description:
When running the following command:
algpred2 -i input_test.fa
input_test.fa content:
>test1
HIPSLEKPLQQQPLPLQQILWYQQQQPIQQQPQPFPQQPPCSQQQQPPLSQQQQPPFSQQQPPFSQQQQPILPQQPPFSQQQQQFPQQQQPLLPQQPPFSQQQPPFSQQQQQPPFSQQQQQPILLQQPPFSQHQQPVLPQQQIPSVQPSILQQLNPCKVFLQQQCSPVAMPQSLARSQMLWQSSCHVMQQQCCRQLPQIPEQSRYDAIRAIIYSIVLQEQQHGQGLNQPQQQQPQQSVQGVSQPQQQQKQLGQCSFQQPQQ
>test2
MAVPQNRVTRSRRNMRRAHDALVAANPASCPNCGELKRPHHVCGACGHYDDREVVAQAAEVDLDDDAA
>test3
TPTGQIHWGNLSKIGVVGIGSASYKVMTRSSHQSLVIKLMPNITLLNNATRVEIAEYRRLLRTVLEPIRDALNAMTQNIRPVQSV
>test4
MGVFNYEVETPSVISAARLFKSYVLDGDKLIPKVAPQAITSVENVGGNGGPGTIKNITFGEGSRYKYVKERVDEVDNTNFKYSYTVIEGDVLGDKLEKVCSELKIVAAPGGGSTLKISSKFHAKGDHEINAEEMKGAKEMAEKLLRAVETYLLAHSAEYN
>test5
MKLLILALTCAAAVWARPGETYSDKYDTIDVNEVLQSERLLKGYVECLLDKGRCTPDGKELKDTLPDALEHECSKCTEKQKSGADTVIRHLVNKRPELWKELAVKYDPENIYQERYKDRLESVKEH
The program crashes with the following traceback:
##############################################################################
# The program AlgPred2.0 is developed for predicting allergenic and non allergenic #
# protein from their primary sequence, developed by Prof G. P. S. Raghava's group. #
# ############################################################################
Summary of Parameters:
Input File: input_test.fa ; Model: 1 ; Threshold: 0.3
Output File: outfile.csv ; Display: 1
Traceback (most recent call last):
File "<frozen runpy>", line 198, in _run_module_as_main
File "<frozen runpy>", line 88, in _run_code
File "C:\Users\User\AppData\Local\Programs\Python\Python313\Scripts\algpred2.exe\__main__.py", line 7, in <module>
sys.exit(main())
~~~~^^
File "C:\Users\User\AppData\Local\Programs\Python\Python313\Lib\site-packages\algpred2\python_scripts\algpred2.py", line 299, in main
CM.to_csv("Sequence_1",header=False,index=None,sep="\n")
~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\User\AppData\Local\Programs\Python\Python313\Lib\site-packages\pandas\util\_decorators.py", line 333, in wrapper
return func(*args, **kwargs)
File "C:\Users\User\AppData\Local\Programs\Python\Python313\Lib\site-packages\pandas\core\generic.py", line 3967, in to_csv
return DataFrameRenderer(formatter).to_csv(
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
path_or_buf,
^^^^^^^^^^^^
...<14 lines>...
storage_options=storage_options,
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
)
^
File "C:\Users\User\AppData\Local\Programs\Python\Python313\Lib\site-packages\pandas\io\formats\format.py", line 1014, in to_csv
csv_formatter.save()
~~~~~~~~~~~~~~~~~~^^
File "C:\Users\User\AppData\Local\Programs\Python\Python313\Lib\site-packages\pandas\io\formats\csvs.py", line 260, in save
self.writer = csvlib.writer(
~~~~~~~~~~~~~^
handles.handle,
^^^^^^^^^^^^^^^
...<5 lines>...
quotechar=self.quotechar,
^^^^^^^^^^^^^^^^^^^^^^^^^
)
^
ValueError: bad delimiter value
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