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minor changes
different minor edits
minor change
adding 3 new parameters recognizeACCFormat, printPTMPositionInProtein and createProteinPTMStates
new lines added
small addition
Updated Analysis mode and input parameters (markdown)
minor correction
new use of parameter collapsePeptidesBySites to specify the ptm(s)
typo corrected
default values description
added default value desription
typos correction
new parameter useMayorityRulesForInfinities
more explanations
new parameters for PTM quant analysis
expand explanation
change in default value
new parameter
added new parameter ignoreTaxonomies