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Cellpose_cell_segmentation_2D_prediction_only.ipynb

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"id": "Nb90LCrotIx4"
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},
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"source": [
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"#**Cellpose Prediction for 2D v0.5**\n",
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"#**Cellpose Prediction for 2D v0.6**\n",
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"A generalist algorithm for cell and nucleus segmentation.\n",
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"\n",
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"***Cellpose code: Carsen Stringer & Marius Pachitariu***\n",
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"\n",
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"**This notebook uses cellpose v2.3.2.**\n",
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"\n",
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"v0.6 update:\n",
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"* 2025/03/24 Restrict numpy<2\n",
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"* Use uv for python package installation as its faster\n",
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"\n",
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"v0.5 update:\n",
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"\n",
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"* 2024/04/09 Constrained cellpose version to be 2.3.2 to maintain compatibility.\n",
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"* Parameters used in cellpose will be saved as a txt file (Thanks for suggestion Kota Miura)\n",
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"\n",
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"\n",
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"In addition to citing the Cellpose paper (essential!), please also cite this notebook.\n",
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"\n",
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"\n",
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"***Author of this notebook: Pradeep Rajasekhar***\n",
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"\n",

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