@@ -238,7 +238,7 @@ Then, the two additional methods `set_tarc`, `plot_tree` and `plot_highlight` i
238238#### Methods
239239- ** .add_tarc(tarc=* str* )** :
240240 Add a new Tarc or Garc class object into tarc_dict.
241- - tarc : Tarc class object (default: None )
241+ - tarc : _ Tarc class object _ (default: None )
242242 Tarc class object to be added.
243243
244244 ** return** * None*
@@ -249,7 +249,7 @@ Then, the two additional methods `set_tarc`, `plot_tree` and `plot_highlight` i
249249 - ** tarc_id** : * str*
250250 ID of the Tarc class object. The ID should be in Tcircle
251251 - ** object.tarc_dict** : * dict*
252- - ** rlim** : ** tuple* * (top=int, bottom=int)
252+ - ** rlim** : * tuple* (top=int, bottom=int)
253253 The top and bottom r limits in data coordinates. The default vlaues is (0, 700).
254254 If the first value is less than second value, tree will be outward direction.
255255 If the first value is larger than second value, tree will be inward direction.
@@ -258,31 +258,31 @@ Then, the two additional methods `set_tarc`, `plot_tree` and `plot_highlight` i
258258 to visualize the clade. A sub-dict is composed of the following key-value pairs:
259259 - ** size** : * int* or * float*
260260 Size of dot. The default value is 5.
261- - ** color** : * float* or * str* replresenting color code.
261+ - ** color** : * float* or * str* replresenting color code.
262262 Face color of dot. The default value is '#303030 '.
263- - ** edgecolor** : * float* or * str* replresenting color code.
263+ - ** edgecolor** : * float* or * str* replresenting color code.
264264 Edge line color of dot. The default value is '#303030 '.
265- - ** linewidth** : * int* or * float*
265+ - ** linewidth** : * int* or * float* .
266266 Edge line width of dot. The default value is 0.5.
267267
268268 ** return** * None*
269269
270270
271271- ** .plot_tree(tarc_id=* str* , highlight_dict=* dict* )** :
272272 Add highlight for specif clade under the given internal clade.
273- - ** highlight_dict** : * dict*
273+ - ** highlight_dict** : * dict*
274274 Dictionay composed of pairs of internal clade name and a sub-dict.
275275 Instead of clade name, tuples of teminal clade names can also be used.
276276 A sub-dict is composed of the following key-value pairs:
277- - ** color** : * str*
277+ - ** color** : * str*
278278 Color of highlight for clades. The default value is "#000000 ".
279- - ** alpha** : * flaot*
279+ - ** alpha** : * flaot*
280280 Alpha of highlight for clades. The default vlalue is 0.25.
281- - ** label** : * str*
281+ - ** label** : * str*
282282 Label. The default vlalue is None.
283- - ** fontsize** : int or float
283+ - ** fontsize** : int or float
284284 Fontsize of label. The default vlalue is 10.
285- - ** y** : * int* or * float*
285+ - ** y** : * int* or * float*
286286 Y location of the text. The default vlalue is the bottom edge of the highliht.
287287
288288 ** return** * None*
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