maxee 1->2; tooltips

Author: anslan

src/components/InputBoolSelect.vue

@@ -51,7 +51,7 @@
           >
         </v-card-title>
       </template>
-      <span>{{ input.tooltip }}</span>
+      <span class="tooltip-text">{{ input.tooltip }}</span>
     </v-tooltip>
     <v-card-actions style="justify-content: center">
       <v-row style="justify-content: center"
@@ -134,6 +134,9 @@ export default {
 </script>
 
 <style lang="scss" scoped>
+.tooltip-text {
+  white-space: pre-line;
+}
 .v-text-field {
   ::v-deep input {
     text-align: center !important;

src/components/InputChip.vue

@@ -49,7 +49,7 @@
         </v-card>
       </div>
     </template>
-    <span>{{ input.tooltip }}</span>
+    <span class="tooltip-text">{{ input.tooltip }}</span>
   </v-tooltip>
 </template>
 
@@ -122,6 +122,9 @@ export default {
 </script>
 
 <style>
+.tooltip-text {
+  white-space: pre-line;
+}
 .v-text-field input {
   text-align: center;
 }

src/components/InputFile.vue

@@ -26,7 +26,7 @@
           >{{ input.name.replace(/_/g, " ") }}</v-card-title
         >
       </template>
-      <span>{{ input.tooltip }}</span>
+      <span class="tooltip-text">{{ input.tooltip }}</span>
     </v-tooltip>
     <v-card-actions style="justify-content: center">
       <v-row
@@ -136,6 +136,9 @@ export default {
 </script>
 
 <style lang="scss" scoped>
+.tooltip-text {
+  white-space: pre-line;
+}
 .v-text-field {
   ::v-deep input {
     text-align: center !important;

src/components/InputSelect.vue

@@ -26,7 +26,7 @@
           >{{ input.name.replace(/_/g, " ") }}</v-card-title
         >
       </template>
-      <span>{{ input.tooltip }}</span>
+      <span class="tooltip-text">{{ input.tooltip }}</span>
     </v-tooltip>
     <v-card-actions style="justify-content: center">
       <v-row style="justify-content: center"
@@ -164,6 +164,9 @@ export default {
 </script>
 
 <style lang="scss" scoped>
+.tooltip-text {
+  white-space: pre-line;
+}
 .v-text-field {
   ::v-deep input {
     text-align: center !important;

src/pipecraft-core/service_scripts/pipeline_options.yaml

@@ -14,8 +14,8 @@ trimming:
   min_overlap: 10
   max_n: 0
   max_err: 1
-  truncQ_R1: 2
-  truncQ_R2: 2
+  truncQ_R1: 3
+  truncQ_R2: 3
   min_length: 100
   cut_R1: 0
   cut_R2: 0
@@ -35,12 +35,12 @@ orient: fwd
 control:
   spike:
   positive:
-forward_primer: "GTGARTCATCGAATCTTTG"
+forward_primer: "GCATCGATGAAGAACGCAGC"
 reverse_primer: "TCCTCCGCTTATTGATATGC"
 custom_sample_table: FALSE
 filtering:
-  maxEE_R1: 1
-  maxEE_R2: 1
+  maxEE_R1: 2
+  maxEE_R2: 2
 tag_jump:
   f: 0.03
   p: 1

src/store/index.js

@@ -2921,15 +2921,16 @@ export default new Vuex.Store({
             value: "ITS2",
             disabled: "never",
             tooltip:
-              "specify region for clustering (because multiple output folders are generated during this process)",
+              "specify region for clustering at NEXT STEP (because multiple output folders are generated during this process)",
             type: "select",
           },
           {
             name: "cluster_full_and_partial",
             value: true,
             disabled: "never",
             tooltip:
-              "if setting 'partial' is not 0, then at the NEXT STEP cluster 'full and partial' (e.g.) ITS2 reads (dir /ITS2/full_and_partial). If OFF, then cluster only full ITS2 reads",
+              `if setting 'partial' is not 0, then at the NEXT STEP cluster 'full and partial' 
+              (e.g.) ITS2 reads (dir /ITS2/full_and_partial). If OFF, then cluster only full ITS2 reads`,
             type: "bool",
           },
         ],
@@ -4200,7 +4201,7 @@ export default new Vuex.Store({
         Inputs: [
           {
             name: "maxEE_R1",
-            value: 1,
+            value: 2,
             disabled: "never",
             tooltip:
               "discard sequences with more than the specified number of expected errors in R1 reads",
@@ -4209,7 +4210,7 @@ export default new Vuex.Store({
           },
           {
             name: "maxEE_R2",
-            value: 1,
+            value: 2,
             disabled: "never",
             tooltip:
               "discard sequences with more than the specified number of expected errors in R2 reads",