When freshly installed on a server from source compilation, this error may be raised:
$ ipk.py build -b $RAXMLNG_BIN -r $WORKDIR/output_model.raxml.reduce.fasta -t $WORKDIR/output_model.raxml.reduce.fasta.raxml.bestTree --ar-config $WORKDIR/model.json --workdir $WORKDIR --model GTR --threads 32 --use-unrooted
Traceback (most recent call last):
File "/usr/local/bioinfo/src/IPK/IPK-v0.5.1/ipk.py", line 13, in <module>
import click
ModuleNotFoundError: No module named 'click'
This will occur if click python module is not installed.
This problem will not appear with conda-based installation, as 'clisk' was set as a dependency in ipk recipe.