Update uv pip install commands to include --system (#1979)

Co-authored-by: Oussama Elachqar <oelachqar@users.noreply.github.com>

Author: jgreer013

.github/workflows/doctests.yaml

@@ -37,7 +37,7 @@ jobs:
       run: |
         # Install in system python as we're in a sandbox env
         # Install in verbose mode to see what's going on
-        uv pip install -e '.[ci_cpu]' --system
+        uv pip install --system -e '.[ci_cpu]'
 
     - name: Cache pre-commit
       uses: actions/cache@v4

.github/workflows/gpu_tests.yaml

@@ -54,7 +54,7 @@ jobs:
       run: |
         # Install in system python as we're in a sandbox env
         # Install in verbose mode to see what's going on
-        uv pip install -e '.[ci_gpu]' hf_transfer --system
+        uv pip install --system -e '.[ci_gpu]' hf_transfer
 
     - name: Download Test Data
       run: |

.github/workflows/pretest.yaml

@@ -45,7 +45,7 @@ jobs:
       run: |
         # Install in system python as we're in a sandbox env
         # Install in verbose mode to see what's going on
-        uv pip install -e '.[ci_cpu]' --system
+        uv pip install --system -e '.[ci_cpu]'
 
     - name: Cache pre-commit
       uses: actions/cache@v4

configs/examples/berry_bench/evaluation/gcp_job.yaml

@@ -37,7 +37,7 @@ envs:
 
 setup: |
   set -e
-  pip install uv && uv pip install oumi[gpu]
+  pip install uv && uv pip install --system oumi[gpu]
 
 run: |
   set -e  # Exit if any command failed.

configs/examples/bulk_inference/gcp_job.yaml

@@ -46,7 +46,7 @@ envs:
 
 setup: |
   set -e
-  pip install uv && uv pip install oumi[gpu]
+  pip install uv && uv pip install --system oumi[gpu]
 
 run: |
   set -e  # Exit if any command failed.

configs/examples/fineweb_ablation_pretraining/ddp/gcp_job.yaml

@@ -31,7 +31,7 @@ envs:
 
 setup: |
   set -e
-  pip install uv && uv pip install oumi[gpu]
+  pip install uv && uv pip install --system oumi[gpu]
 
 run: |
   set -e  # Exit if any command failed.

configs/examples/fineweb_ablation_pretraining/fsdp/gcp_job.yaml

@@ -31,7 +31,7 @@ envs:
 
 setup: |
   set -e
-  pip install uv && uv pip install oumi[gpu]
+  pip install uv && uv pip install --system oumi[gpu]
 
 run: |
   set -e  # Exit if any command failed.

configs/examples/grpo_tldr/gcp_job.yaml

@@ -31,7 +31,7 @@ envs:
 
 setup: |
   set -e
-  pip install uv && uv pip install oumi[gpu]
+  pip install uv && uv pip install --system oumi[gpu]
 
 run: |
   set -e  # Exit if any command failed.

configs/examples/grpo_verl_countdown/gcp_job.yaml

@@ -33,7 +33,7 @@ envs:
 
 setup: |
   set -e
-  pip install uv && uv pip install oumi[gpu]
+  pip install uv && uv pip install --system oumi[gpu]
   pip install -U flash-attn --no-build-isolation
 
 run: |

configs/examples/grpo_verl_geometry3k/gcp_job.yaml

@@ -35,7 +35,7 @@ envs:
 
 setup: |
   set -e
-  pip install uv && uv pip install oumi[gpu] huggingface_hub[hf_xet] mathruler
+  pip install uv && uv pip install --system oumi[gpu] huggingface_hub[hf_xet] mathruler
   # TODO: OPE-1331 - Fix bug that lets us upgrade to verl 0.4.0.
   # Note that qwen_vl_utils needs to manually installed.
   # In the meantime, we need to use this specific commit to support vLLM 0.8.3: