Repositories list

• SCREEN3.0

  Public
  TypeScript

  •

  MIT License

  •0•1•25•0•Updated Sep 23, 2025Sep 23, 2025

• bkresge

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Sep 23, 2025Sep 23, 2025

• SCREEN2.0

  Public
  TypeScript

  •

  MIT License

  •0•5•29•6•Updated Sep 22, 2025Sep 22, 2025

• genomebrowser

  Public
  TypeScript

  •

  MIT License

  •0•1•7•0•Updated Sep 22, 2025Sep 22, 2025

• genomebrowser-app

  Public
  TypeScript

  •1•1•0•0•Updated Sep 19, 2025Sep 19, 2025

• web-components

  Public
  Shared web components across the Weng/Moore lab suite of genomics research tools

  TypeScript

  •0•0•5•0•Updated Sep 18, 2025Sep 18, 2025

• ENCODE-cCREs

  Public
  Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements

  Shell

  •7•25•6•0•Updated Sep 17, 2025Sep 17, 2025

• igSCREEN

  Public
  TypeScript

  •

  MIT License

  •1•1•19•0•Updated Sep 8, 2025Sep 8, 2025

• dna-methylation-code

  Public
  Code from DNA methylation project in summer 2025

  Jupyter Notebook

  •0•0•0•0•Updated Sep 4, 2025Sep 4, 2025

• zlabwiki

  Public
  HTML

  •

  MIT License

  •0•0•0•0•Updated Sep 3, 2025Sep 3, 2025

• TEMP2

  Public
  Algorithm to detect germline and de novo transposon insertions

  Shell

  •

  GNU General Public License v3.0

  •7•30•0•0•Updated Aug 14, 2025Aug 14, 2025

• Factorbook2.0

  Public template
  TypeScript

  •0•3•12•5•Updated Aug 6, 2025Aug 6, 2025

• atac-smk

  Public
  ATAC-seq pipeline

  Python

  •1•0•0•0•Updated Jul 26, 2025Jul 26, 2025

• psychscreen

  Public
  PsychSCREEN

  TypeScript

  •

  MIT License

  •1•2•0•0•Updated Jun 30, 2025Jun 30, 2025

• psychscreen-ui-components

  Public
  common UI components for PsychSCREEN

  TypeScript

  •

  MIT License

  •0•1•32•0•Updated Jun 24, 2025Jun 24, 2025

• logojs-package

  Public
  Javascript package for embedding sequence logos

  javascriptsvgbioinformatics+ 5data-visualizationjavascript-librarysequence-logoreactjsdna-logo

  JavaScript

  •

  MIT License

  •6•15•4•7•Updated Jun 16, 2025Jun 16, 2025

• signal-service

  Public
  Service for signal and peak data

  TypeScript

  •

  MIT License

  •0•2•0•8•Updated Jun 5, 2025Jun 5, 2025

• download-encode

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

• nshedd

  Public
  Nicole's code and stuff

  Python

  •0•0•0•0•Updated Feb 21, 2025Feb 21, 2025

• dnaseseq-workflow

  Public
  Kotlin

  •0•0•0•0•Updated Dec 17, 2024Dec 17, 2024

• cluster-buster

  Public
  C++

  •2•9•1•1•Updated Sep 27, 2024Sep 27, 2024

• VIPER

  Public
  Variant interpretation pipeline and resource

  Shell

  •

  MIT License

  •0•0•0•0•Updated Jun 27, 2024Jun 27, 2024

• SCREEN

  Public
  JavaScript

  •

  MIT License

  •2•9•61•9•Updated Mar 1, 2024Mar 1, 2024

• dictys

  Public
  Python

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated Feb 20, 2024Feb 20, 2024

• docker-nss

  Public
  libnss plugin for Docker

  C

  •7•0•0•0•Updated Jan 26, 2024Jan 26, 2024

• libzdock

  Public
  ZDOCK predictions and PDB structures in C++ and Python

  cpppdbstructure+ 9transformationreceptorligandzdocklibpdbm-zdockzlab+ 2

  C++

  •

  BSD 2-Clause "Simplified" License

  •5•12•0•0•Updated Jan 1, 2024Jan 1, 2024

• ATLAS

  Public
  Altered TCR Ligand Affinities and Structures

  HTML

  •

  GNU General Public License v3.0

  •2•11•5•0•Updated Dec 1, 2023Dec 1, 2023

• chrombpnet-workflow

  Public
  Krews workflow for running ChromBPNet

  Python

  •

  MIT License

  •0•0•0•0•Updated Nov 18, 2023Nov 18, 2023

• krews

  Public
  KREWS Scientific Data Pipeline Framework

  analysis-pipelinekotlinworkflows

  Kotlin

  •0•3•0•0•Updated Oct 25, 2023Oct 25, 2023

• bigwig-reader

  Public
  Typescript library for reading BigWig and BigBed files.

  visualizationbioinformaticstypescript-library+ 4readerdataloaderbigwig-readerbigbed-files

  TypeScript

  •

  MIT License

  •6•8•0•3•Updated Jul 18, 2023Jul 18, 2023