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    46 repositories

    • wassermanlab.github.io

      Public
      HTML
      •
      MIT License
      •1•0•0•0•Updated Aug 1, 2025Aug 1, 2025

    • variome

      Public
      Python
      •3•3•0•1•Updated May 21, 2025May 21, 2025

    • ansible

      Public
      0•0•0•0•Updated May 14, 2025May 14, 2025

    • OnTarget

      Public
      Python
      •
      MIT License
      •1•2•0•0•Updated May 13, 2025May 13, 2025

    • Variant_catalogue_pipeline

      Public
      Variant catalogue pipeline
      nextflowpipelinegenomicsvcf
      HTML
      •
      Apache License 2.0
      •10•25•1•1•Updated May 1, 2025May 1, 2025

    • ExplaiNN

      Public
      ExplaiNN: interpretable and transparent neural networks for genomics
      Jupyter Notebook
      •
      MIT License
      •9•49•4•1•Updated Apr 1, 2025Apr 1, 2025

    • JASPAR-inference-tool

      Public
      Code and data used by the JASPAR profile inference tool
      gene-regulationlogistic-regressiontfbs-discovery
      Python
      •
      MIT License
      •2•7•1•0•Updated Jan 3, 2025Jan 3, 2025

    • IBVL

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Nov 22, 2024Nov 22, 2024

    • GUD

      Public
      Genomic Unification Database
      Python
      •
      MIT License
      •0•0•5•0•Updated Oct 31, 2024Oct 31, 2024

    • GeneBreaker

      Public
      GeneBreaker - Enabling the creation of synthetic rare disease scenarios
      Shell
      •
      Other
      •0•4•3•27•Updated Oct 30, 2024Oct 30, 2024

    • PopSVar

      Public
      0•0•0•0•Updated Sep 17, 2024Sep 17, 2024

    • scheduler

      Public
      Python
      •0•0•0•0•Updated Jun 3, 2024Jun 3, 2024

    • plp

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Mar 10, 2024Mar 10, 2024

    • gene2wordclouds

      Public
      MIT License
      •1•2•1•0•Updated Jul 4, 2023Jul 4, 2023

    • TF-Binding-Matrix

      Public
      A sparse 3D matrix of 2,503,732 bound and open regions across 175 transcription factors and 70 cells/tissues
      Python
      •
      MIT License
      •2•3•0•0•Updated Jun 1, 2023Jun 1, 2023

    • PWM-to-filter-weights

      Public
      Python
      •0•1•0•0•Updated Jun 1, 2023Jun 1, 2023

    • pubmed_db

      Public
      PubmedDB
      Python
      •0•1•0•0•Updated May 18, 2023May 18, 2023

    • XEnrich

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Apr 5, 2023Apr 5, 2023

    • transformers

      Public
      Jupyter Notebook
      •
      MIT License
      •641•0•0•0•Updated Nov 21, 2022Nov 21, 2022

    • knits

      Public
      Python
      •0•0•0•0•Updated Aug 30, 2022Aug 30, 2022

    • JASPAR-UCSC-tracks

      Public
      Code and data used to create the JASPAR UCSC Genome Browser tracks data hub
      gene-regulationtfbs-discovery
      Python
      •
      MIT License
      •6•14•1•0•Updated Aug 12, 2022Aug 12, 2022

    • ADS

      Public
      Allele Dispersion Score : Quantifying the range of allele frequencies across populations, based on UMAP
      R
      •0•2•0•0•Updated Feb 10, 2022Feb 10, 2022

    • revup

      Public
      JavaScript
      •0•2•0•0•Updated Jan 6, 2022Jan 6, 2022

    • TF-Binding-Transfer-Learning

      Public
      IPython notebooks and scripts for performing the different transfer learning experiments
      Jupyter Notebook
      •
      MIT License
      •3•7•0•0•Updated Aug 27, 2021Aug 27, 2021

    • TFFM

      Public
      TFFM framework
      Python
      •
      GNU Lesser General Public License v3.0
      •6•13•1•1•Updated Jun 28, 2021Jun 28, 2021

    • CTCF

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jan 22, 2021Jan 22, 2021

    • OpenFlexTyper

      Public
      An FM-index based tool for the rapid search of variants/sequences within unmapped read sets.
      C++
      •4•4•3•1•Updated Dec 21, 2020Dec 21, 2020

    • Doxygen_Example

      Public
      An example set up for Doxygen to auto generate Github Pages
      R
      •
      MIT License
      •0•0•0•0•Updated Oct 27, 2020Oct 27, 2020

    • BiasAway

      Public
      Python
      •
      GNU Lesser General Public License v3.0
      •5•7•0•0•Updated Jul 8, 2020Jul 8, 2020

    • OpenFlexTyper_restore

      Public
      OpenFlexTyper
      C++
      •
      MIT License
      •0•1•0•0•Updated Feb 20, 2020Feb 20, 2020