Repositories list

• visualization-test

  Public
  testing workshop repo creation

  CSS

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  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jul 28, 2025Jul 28, 2025

• 2025-August-Intermediate-Visualization-for-Bioinformatics

  Public
  A workshop to teach participants how to use R to visualize bioinformatics data. I.e., make pretty pictures!

  HTML

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  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jul 21, 2025Jul 21, 2025

• 2025-July-Introduction-to-R-for-Bioinformatics

  Public
  An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.

  HTML

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  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jul 19, 2025Jul 19, 2025

• 2025-July-Single-Cell-RNA-Seq-Analysis

  Public
  HTML

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  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Jul 10, 2025Jul 10, 2025

• ucdavis-bioinformatics-training.github.io

  Public
  CSS

  •0•5•0•0•Updated Jun 17, 2025Jun 17, 2025

• 2025-June-Introduction-to-the-Command-Line-for-Bioinformatics

  Public
  An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.

  CSS

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  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jun 14, 2025Jun 14, 2025

• 2025-June-RNA-Seq-Analysis

  Public
  HTML

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  Creative Commons Zero v1.0 Universal

  •1•0•0•0•Updated Jun 5, 2025Jun 5, 2025

• 2023-June-RNA-Seq-Analysis

  Public
  HTML

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  Creative Commons Zero v1.0 Universal

  •0•2•0•0•Updated Jun 4, 2025Jun 4, 2025

• 2025-Spring-BIS180L

  Public
  HTML

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  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated May 29, 2025May 29, 2025

• 2025-May-Introduction-To-Python-For-Bioinformatics

  Public
  This workshop consists of five half-day sessions, combining lecture and exercises to teach you the basics of programming (using python), with an emphasis on bioinformatics. Completion of this material will allow participants to get the most out of our other experiment-centric workshops. No previous python experience is necessary.

  CSS

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  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated May 12, 2025May 12, 2025

• 2025-April-Introduction-to-R-for-Bioinformatics

  Public
  An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.

  HTML

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  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Apr 19, 2025Apr 19, 2025

• 2025-March-Spatial-Transcriptomics

  Public
  HTML

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  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Mar 27, 2025Mar 27, 2025

• 2021-July-Genome-Wide-Association-Studies

  Public
  Learn to execute a successful GWAS experiment from design to analysis.

  HTML

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  Creative Commons Zero v1.0 Universal

  •3•7•0•0•Updated Mar 17, 2025Mar 17, 2025

• 2024-December-Single-Cell-RNA-Seq-Analysis

  Public
  HTML

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  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Dec 10, 2024Dec 10, 2024

• 2024-November-Introduction-To-Python-For-Bioinformatics

  Public
  This workshop consists of five half-day sessions, combining lecture and exercises to teach you the basics of programming (using python), with an emphasis on bioinformatics. Completion of this material will allow participants to get the most out of our other experiment-centric workshops. No previous python experience is necessary.

  CSS

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  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Nov 23, 2024Nov 23, 2024

• 2024-October-Introduction-to-R-for-Bioinformatics

  Public
  An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.

  HTML

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  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

• 2024-September-Introduction-to-the-Command-Line-for-Bioinformatics

  Public
  An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.

  CSS

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  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Sep 21, 2024Sep 21, 2024

• limma-proteomics-August-2024

  Public
  CSS

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  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Aug 28, 2024Aug 28, 2024

• limma-proteomics-analysis-August-2024

  Public
  0•0•0•0•Updated Aug 27, 2024Aug 27, 2024

• 2024-July-Introduction-to-R-for-Bioinformatics

  Public
  An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.

  HTML

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  BSD 3-Clause "New" or "Revised" License

  •0•2•0•0•Updated Jul 20, 2024Jul 20, 2024

• 2024-June-RNA-Seq-Analysis

  Public
  HTML

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  Creative Commons Zero v1.0 Universal

  •0•1•0•0•Updated Jun 28, 2024Jun 28, 2024

• 2024-June-Advanced-Topics-in-Single-Cell-RNA-Seq-Multiome

  Public
  HTML

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  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Jun 13, 2024Jun 13, 2024

• 2024-June-Single-Cell-RNA-Seq-Analysis

  Public
  HTML

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  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Jun 13, 2024Jun 13, 2024

• 2024-June-Introduction-to-the-Command-Line-for-Bioinformatics

  Public
  An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.

  CSS

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  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jun 8, 2024Jun 8, 2024

• 2024-April-Introduction-To-Python-For-Bioinformatics

  Public
  This workshop consists of five half-day sessions, combining lecture and exercises to teach you the basics of programming (using python), with an emphasis on bioinformatics. Completion of this material will allow participants to get the most out of our other experiment-centric workshops. No previous python experience is necessary.

  CSS

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  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated May 4, 2024May 4, 2024

• 2024-March-Introduction-to-R-for-Bioinformatics

  Public
  An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.

  CSS

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  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Mar 16, 2024Mar 16, 2024

• 2024-March-Introduction-to-the-Command-Line-for-Bioinformatics

  Public
  An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.

  CSS

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  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Mar 9, 2024Mar 9, 2024

• 2023-December-Spatial

  Public
  A one-day exploration of spatial transcriptomics

  HTML

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  GNU General Public License v3.0

  •0•1•0•0•Updated Mar 8, 2024Mar 8, 2024

• 2023-December-Single-Cell-RNA-Seq-Analysis

  Public
  A three day hands-on workshop for researchers interested in single cell RNA-Seq

  HTML

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  Creative Commons Zero v1.0 Universal

  •0•3•0•0•Updated Dec 13, 2023Dec 13, 2023

• 2023-Dec-Introduction-To-Python-For-Bioinformatics

  Public
  This workshop consists of five half-day sessions, combining lecture and exercises to teach you the basics of programming (using python), with an emphasis on bioinformatics. Completion of this material will allow participants to get the most out of our other experiment-centric workshops. No previous python experience is necessary.

  CSS

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  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Dec 11, 2023Dec 11, 2023