Repositories list

• netpyne

  Public
  A Python package to facilitate the development, parallel simulation, optimization and analysis of multiscale biological neuronal networks in NEURON.

  Python

  •

  MIT License

  •137•160•73•4•Updated Aug 21, 2025Aug 21, 2025

• pd_m1_6ohda

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Aug 20, 2025Aug 20, 2025

• PK_model_L-DOPA

  Public
  Python

  •0•0•0•0•Updated Aug 12, 2025Aug 12, 2025

• batchtk

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Jul 3, 2025Jul 3, 2025

• SDinVivo

  Public
  Python

  •1•0•0•0•Updated Jun 20, 2025Jun 20, 2025

• Spillover_2

  Public
  HTML

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jun 12, 2025Jun 12, 2025

• S1_Thal_NetPyNE_Frontiers_2022

  Public
  Large-scale biophysically detailed model of somatosensory thalamocortical circuits in NetPyNE

  Jupyter Notebook

  •2•2•0•0•Updated Apr 14, 2025Apr 14, 2025

• PFC_NE_effect

  Public
  0•0•0•0•Updated Mar 10, 2025Mar 10, 2025

• PFC_IT_NE_effect

  Public
  0•0•0•0•Updated Mar 10, 2025Mar 10, 2025

• PFC_PT_NE_effect

  Public
  0•0•0•0•Updated Mar 10, 2025Mar 10, 2025

• m1_aval

  Public
  Primary motor cortex (M1) avalanche study

  Python

  •

  MIT License

  •0•0•0•0•Updated Feb 9, 2025Feb 9, 2025

• CHIanalysis

  Public
  Analysis tools for behavioral data from closed-head injury animal experiments

  Python

  •0•0•0•0•Updated Aug 7, 2024Aug 7, 2024

• netpyne_jupyternb_tutorials

  Public
  CNS 2024 NetPyNE Tutorial

  C

  •1•1•0•0•Updated Jul 20, 2024Jul 20, 2024

• netpyne-jupyternb-tutorials

  Public
  0•0•0•0•Updated Jul 20, 2024Jul 20, 2024

• netpyne_tutorials

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jul 5, 2024Jul 5, 2024

• S1_HFO

  Public
  High frequency oscillations in S1 microcircuit

  Jupyter Notebook

  •0•0•0•0•Updated Jan 31, 2024Jan 31, 2024

• S1_mouse

  Public
  netpyne code

  AMPL

  •0•1•0•0•Updated Jan 28, 2024Jan 28, 2024

• M1-channelopthies-OSB

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jan 26, 2024Jan 26, 2024

• netpyne-web

  Public
  1•0•0•1•Updated Jan 25, 2024Jan 25, 2024

• M1_NetPyNE_CellReports_2023

  Public
  Multiscale model of mouse primary motor cortex (M1) circuits developed in NetPyNE

  Python

  •3•7•0•0•Updated Dec 13, 2023Dec 13, 2023

• PDCM_NetPyNE

  Public
  Python

  •

  MIT License

  •2•4•0•0•Updated Oct 16, 2023Oct 16, 2023

• EEG_schizophrenia

  Public
  Python

  •2•2•0•0•Updated Sep 26, 2023Sep 26, 2023

• tvb-multiscale

  Public
  Integration between TVB and NetPyNE, for multiscale (co)simulations .

  Python

  •

  Other

  •26•3•0•4•Updated Aug 15, 2023Aug 15, 2023

• nonlinear_impedance_phase

  Public
  AGS Script

  •0•0•0•0•Updated Jul 17, 2023Jul 17, 2023

• Comp-Neuro-Grad-Course

  Public
  SUNY Downstate Python Tutorials

  Jupyter Notebook

  •1•1•0•0•Updated Mar 9, 2023Mar 9, 2023

• S1_netpyne

  Public
  AGS Script

  •2•2•2•0•Updated Dec 15, 2022Dec 15, 2022

• SDinSlice

  Public
  Tissue-scale model of spreading depolarization in brain slices

  Python

  •1•0•0•0•Updated Nov 23, 2022Nov 23, 2022

• CtxEmAnalysis

  Public
  Python

  •0•0•0•0•Updated Nov 1, 2022Nov 1, 2022

• reach2022

  Public
  Python

  •0•0•0•0•Updated Aug 10, 2022Aug 10, 2022

• L5PYR_Resonance

  Public
  AGS Script

  •0•0•0•0•Updated May 5, 2022May 5, 2022