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    115 repositories

    • scipion-em-tomo

      Public
      Base tomography Scipion plugin with data model definition
      tomo
      Python
      •
      GNU General Public License v3.0
      •5•9•40•2•Updated Aug 12, 2025Aug 12, 2025

    • scipion-em-reliontomo

      Public
      Plugin to use Relion tomography programs within the Scipion framework
      tomo
      Python
      •
      GNU General Public License v3.0
      •2•2•5•1•Updated Aug 12, 2025Aug 12, 2025

    • scipion-em-emantomo

      Public
      Plugin to use Eman2 tomography programs within the Scipion framework
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•2•7•1•Updated Aug 11, 2025Aug 11, 2025

    • scipion-em-warp

      Public
      Plugin to use Warp programs within the Scipion framework
      spatomo
      Python
      •
      GNU General Public License v3.0
      •0•0•1•1•Updated Aug 11, 2025Aug 11, 2025

    • scipion-em-imod

      Public
      Plugin to use some of the Tomography tools from IMOD in Scipion
      tomo
      Python
      •
      GNU General Public License v3.0
      •2•2•17•2•Updated Aug 8, 2025Aug 8, 2025

    • scipion-em-tomo3d

      Public
      Plugin for the software of Jose Jesus Fernandez
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•0•2•0•Updated Aug 8, 2025Aug 8, 2025

    • scipion-em-aretomo

      Public
      Plugin to use AreTomo within the Scipion framework
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•1•1•0•Updated Aug 8, 2025Aug 8, 2025

    • scipion-em-opusdsd

      Public
      Plugin to use OPUS-DSD programs within the Scipion framework
      spa
      Python
      •
      GNU General Public License v3.0
      •0•3•0•0•Updated Aug 6, 2025Aug 6, 2025

    • scipion-em-cryosparc2

      Public
      Plugin to use cryoSPARC2 programs within the Scipion framework
      spa
      Python
      •
      GNU General Public License v3.0
      •1•2•10•1•Updated Aug 6, 2025Aug 6, 2025

    • docs

      Public
      Scipion documentation repository
      other
      Python
      •
      GNU General Public License v3.0
      •7•1•2•2•Updated Aug 6, 2025Aug 6, 2025

    • metadata-viewer

      Public
      Generic metadata viewer
      core
      Python
      •
      GNU General Public License v3.0
      •0•0•3•0•Updated Jul 31, 2025Jul 31, 2025

    • scipion-em-gapstop

      Public
      Plugin to use Gapstop_TM in Scipion
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 29, 2025Jul 29, 2025

    • scipion-em

      Public
      Base Scipion plugin defining objects and protocols for EM
      spacoretomo
      Python
      •
      GNU General Public License v3.0
      •6•9•22•4•Updated Jul 28, 2025Jul 28, 2025

    • scipion-em-teamtomo

      Public
      Plugin to use TeamTomo-libraries based tools
      0•0•0•0•Updated Jul 25, 2025Jul 25, 2025

    • scipion-em-smartscope

      Public
      Plugin to manage the interaction with the SmartScope framework.
      Python
      •
      GNU General Public License v3.0
      •0•4•1•1•Updated Jul 23, 2025Jul 23, 2025

    • scipion-pyworkflow

      Public
      Underlying pyworkflow module for the Scipion framework
      core
      Python
      •
      GNU General Public License v3.0
      •7•5•38•1•Updated Jul 23, 2025Jul 23, 2025

    • scipion-em-cryocare

      Public
      Plugin to integrate cryoCARE: denoiser for tomography
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•3•0•0•Updated Jul 18, 2025Jul 18, 2025

    • scipion-em-arctic

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 11, 2025Jul 11, 2025

    • scipion-em-facilities

      Public
      Plugin for Cryo-EM facilities to be used within Scipion framework
      other
      Python
      •
      GNU General Public License v3.0
      •1•0•6•3•Updated Jul 11, 2025Jul 11, 2025

    • scipion-em-roodmus

      Public
      atom
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 10, 2025Jul 10, 2025

    • scipion-em-phenix

      Public
      wrappers for phenix package
      atom
      Python
      •
      GNU General Public License v3.0
      •1•2•3•3•Updated Jul 10, 2025Jul 10, 2025

    • scipion-em-fidder

      Public
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 7, 2025Jul 7, 2025

    • scipion-em-cryoten

      Public
      Wrappers to CryoTen (https://github.com/jianlin-cheng/cryoten)
      atom
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jul 7, 2025Jul 7, 2025

    • scipion-em-mapq

      Public
      atom
      Python
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Jul 2, 2025Jul 2, 2025

    • scipion-app

      Public
      Base Scipion application that is based on pyworkflow and all extension plugins
      core
      Python
      •
      GNU General Public License v3.0
      •2•7•9•1•Updated Jul 1, 2025Jul 1, 2025

    • scipion-em-repic

      Public
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 26, 2025Jun 26, 2025

    • scipion-em-miffi

      Public
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Jun 24, 2025Jun 24, 2025

    • scipion-em-deepdewedge

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 16, 2025Jun 16, 2025

    • scipion-em-deepfinder

      Public
      Scipion plugin for deepfinder (tomography picker)
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•3•2•0•Updated Jun 13, 2025Jun 13, 2025

    • scipion-em-flexutils

      Public
      Python
      •
      GNU General Public License v3.0
      •0•2•3•0•Updated Jun 10, 2025Jun 10, 2025