Repositories list

• CA1_Cutsuridis

  Public template
  Encoding and retrieval in a model of the hippocampal CA1 microcircuit (Cutsuridis et al. 2009)

  project-template-2021

  Python

  •27•0•0•3•Updated Aug 1, 2023Aug 1, 2023

• super_izhikevich

  Public
  An exercise in Python Class Inheritance using Izhikevich cells

  Python

  •54•0•0•0•Updated Mar 23, 2023Mar 23, 2023

• Sanjay2015

  Public
  CA3 Network Model of Epileptic Activity (Sanjay et. al, 2015)

  AMPL

  •4•0•0•1•Updated Aug 8, 2022Aug 8, 2022

• BU-RISE-

  Public
  Our final project for BU RISE practicum

  Python

  •1•0•0•0•Updated Aug 5, 2022Aug 5, 2022

• lsd_dendritic_complexity

  Public
  AMPL

  •0•0•0•0•Updated Aug 3, 2022Aug 3, 2022

• dentate_new

  Public
  AMPL

  •3•0•0•0•Updated Aug 2, 2022Aug 2, 2022

• Kuznetsova2010

  Public
  Python

  •2•0•0•0•Updated Jul 29, 2022Jul 29, 2022

• Foutz2012

  Public
  Optical stimulation of a channelrhodopsin-2 positive pyramidal neuron model (Foutz et al 2012)

  Jupyter Notebook

  •6•0•0•0•Updated Jul 27, 2022Jul 27, 2022

• hoc2py

  Public
  0•0•0•0•Updated Jul 24, 2022Jul 24, 2022

• BahlSynapsesPy

  Public
  Bahl et al (2012) pyramidal cell with or without calcium dynamics, synaptic input added, converted to python.

  project-template-2021

  Python

  •21•0•0•0•Updated Jul 20, 2022Jul 20, 2022

• cricket

  Public
  0•0•0•0•Updated Jun 27, 2022Jun 27, 2022

• sea_slug_skeleton

  Public
  Skeleton program file in which to create a simulation of the sea slug gill reflex.

  Python

  •63•0•0•0•Updated Mar 3, 2022Mar 3, 2022

• MuddapuHEM2020

  Public
  Muddapu and Chakravarthy, 2020. Multi-Scale Computational Model of Excitotoxic Loss of Dopaminergic Cells in Parkinson’s Disease

  MATLAB

  •3•0•0•1•Updated Aug 13, 2021Aug 13, 2021

• STDP_simulation

  Public
  Python

  •1•0•0•0•Updated Aug 12, 2021Aug 12, 2021

• lindroos2018

  Public
  Striatal D1R medium spiny neuron, including a subcellular DA cascade (Lindroos et al 2018)

  Python

  •6•0•0•0•Updated Aug 5, 2021Aug 5, 2021

• VTA-neurons-opiates-withdrawal

  Public
  AMPL

  •3•0•0•0•Updated Aug 5, 2021Aug 5, 2021

• drugs_and_working_memory

  Public
  Modeling the effects of drugs on working memory and the delayed response task

  Jupyter Notebook

  •1•0•0•0•Updated Aug 4, 2021Aug 4, 2021

• rise2021

  Public
  Jupyter Notebook

  •2•0•0•0•Updated Aug 4, 2021Aug 4, 2021

• dave2020cell

  Public
  Dave et al 2020 Single CA1 Pyramidal cell model

  AMPL

  •2•0•0•0•Updated Aug 3, 2021Aug 3, 2021

• ball_and_stick_modeling

  Public
  Python

  •2•0•0•0•Updated Jul 20, 2021Jul 20, 2021

• neuron

  Public
  Python

  •3•0•0•0•Updated Jul 18, 2021Jul 18, 2021

• dentate_network

  Public
  Dentate gyrus network that can be rendered seizure-prone

  project-template-2021

  AMPL

  •5•0•0•0•Updated Jun 23, 2021Jun 23, 2021

• risecourse

  Public
  Config files for my GitHub profile.

  configgithub-config

  0•0•0•0•Updated May 11, 2021May 11, 2021

• AstrocyteSegmentation

  Public
  Python

  •7•0•0•0•Updated Dec 30, 2020Dec 30, 2020

• SerotonergicTuckwell

  Public
  A serotonergic neuron model by Dr. Henry Tuckwell

  MATLAB

  •0•0•0•0•Updated Aug 17, 2020Aug 17, 2020

• visual

  Public
  AGS Script

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Aug 12, 2020Aug 12, 2020

• rise-group-a-2020

  Public
  C

  •5•0•0•0•Updated Aug 9, 2020Aug 9, 2020

• doug2017_with_skca

  Public
  Dougalis2017EtAl modified to add a small calcium activated potassium channel

  AMPL

  •1•0•0•0•Updated Aug 7, 2020Aug 7, 2020

• alz_code

  Public
  AMPL

  •1•0•0•0•Updated Aug 7, 2020Aug 7, 2020

• PyMUS

  Public
  Simulator for Virtual Experiments on Motor Unit System

  Python

  •

  GNU General Public License v3.0

  •6•0•0•1•Updated Jul 31, 2020Jul 31, 2020