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16 repositories

nxontology-data
Public
NXOntology data: making ontologies accessible as simple JSON files
python taxonomies graphs networkx obo networks pubchem ontologies hierarchies network-biology
Jupyter Notebook
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Other
•4•14•2•0•Updated Jun 1, 2025Jun 1, 2025
ensembl-genes
Public
Extract the Ensembl genes catalog to simple tables
bioinformatics sql human mouse ensembl rat genes
Python
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Other
•4•19•6•0•Updated May 7, 2025May 7, 2025
gce-github-runner
Public
Ephemeral GCE/GCP GitHub self-hosted runner
self-hosted-runner actions gcp google-cloud-platform github-actions
Shell
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Apache License 2.0
•46•46•8•0•Updated Apr 9, 2025Apr 9, 2025
articat
Public archive
articat: data artifact catalog
data-catalog data-discovery data-platform data-management
Python
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Apache License 2.0
•2•17•19•0•Updated Feb 17, 2025Feb 17, 2025
clinical_advancement_paper
Public
Jupyter Notebook
•1•4•0•0•Updated Nov 10, 2024Nov 10, 2024
oai_utils
Public archive
OpenAI Python Utils
Python
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Apache License 2.0
•0•4•0•0•Updated Jun 24, 2024Jun 24, 2024
xrml
Public
A lightweight machine learning framework for Xarray
Python
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Apache License 2.0
•2•22•0•0•Updated Nov 28, 2023Nov 28, 2023
nxontology-ml
Public
Machine learning to classify ontology nodes
python networkx mondo classification ontologies diseases nxontology efo
Jupyter Notebook
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Apache License 2.0
•0•6•2•0•Updated Oct 20, 2023Oct 20, 2023
txdnet
Public
Curated mechanistic drug target → disease networks for algorithmic method evaluation
Jupyter Notebook
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Apache License 2.0
•0•1•0•0•Updated Jul 22, 2023Jul 22, 2023
nxontology
Public
NetworkX-based Python library for representing ontologies
graphs similarity networkx networks semantic-similarity ontologies digraph information-content intrinsic-similarity
Python
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Apache License 2.0
•8•90•2•1•Updated Jul 12, 2023Jul 12, 2023
platform-pipe
Public
Open Targets evidence normalization and scoring pipeline
Jupyter Notebook
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Apache License 2.0
•2•12•2•9•Updated Dec 8, 2022Dec 8, 2022
ukb-gwas-pipeline-nealelab
Public
Pipeline for reproduction of NealeLab 2018 UKB GWAS
Python
•3•4•16•0•Updated Jan 21, 2021Jan 21, 2021
gwas-analysis-manuscript
Public
A comparison of GWAS analysis tools (Glow, Hail, and PLINK)
HTML
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Other
•1•5•0•0•Updated Jul 6, 2020Jul 6, 2020
gwas-analysis
Public
GWAS data analysis experiments
Jupyter Notebook
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Apache License 2.0
•6•24•20•1•Updated Jul 1, 2020Jul 1, 2020
string-protein-network
Public
STRING protein network dataset downloads and transformations
string human genes networks datasets ppi network-biology
HTML
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Other
•2•5•3•0•Updated May 8, 2020May 8, 2020
postgap-docker
Public
Reproducible installation and execution for postgap
Jupyter Notebook
•1•1•0•0•Updated Jan 7, 2020Jan 7, 2020