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@pairwise-alignment pairwise-alignment

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    11 repositories

    • pa-types

      Public
      Basic types and functions for pairwise alignment.
      librarybioinformaticspairwise-alignment
      Rust
      •
      MIT License
      •0•3•1•0•Updated Jul 17, 2025Jul 17, 2025

    • edlib-rs

      Public
      rust binding to edlib
      Rust
      •7•0•0•0•Updated May 6, 2025May 6, 2025

    • pa-generate

      Public
      Generate random sequence pairs to test pairwise aligners
      data-generatorpairwise-alignment
      Rust
      •
      MIT License
      •0•1•0•0•Updated Mar 20, 2025Mar 20, 2025

    • pa-bench

      Public
      Benchmarking pairwise aligners
      benchmarkpairwise-alignment
      Jupyter Notebook
      •
      MIT License
      •1•36•4•0•Updated Feb 8, 2025Feb 8, 2025

    • pa-extend

      Public
      Jupyter Notebook
      •0•1•0•0•Updated Feb 8, 2025Feb 8, 2025

    • pa-bench-paper

      Public
      0•0•0•0•Updated Mar 27, 2024Mar 27, 2024

    • ksw2

      Public
      Global alignment and alignment extension, with added band doubling
      C
      •
      Other
      •27•0•0•0•Updated Jun 27, 2023Jun 27, 2023

    • rust-wfa2

      Public
      Rust binding for WFA2-lib
      Rust
      •
      MIT License
      •6•5•0•0•Updated Jun 26, 2023Jun 26, 2023

    • .github

      Public
      Org readme
      0•0•0•0•Updated Mar 22, 2023Mar 22, 2023

    • ksw2-sys

      Public
      Rust bindings for ksw2 alignment library
      Rust
      •2•0•0•0•Updated Feb 8, 2023Feb 8, 2023

    • bam2seq

      Public
      Converts a BAM file to reads and reconstructed references using the CIGAR and MD tag.
      Rust
      •0•5•0•0•Updated Oct 28, 2022Oct 28, 2022