Repositories list

• AdducTrackR

  Public
  AdducTrackR is an R package designed to compute all possible peptide oligomers from the exact masses of proteinogenic amino acids, for any specified degree of oligomerization. It supports in silico modeling of peptide-polyphenol interactions to assist in the annotation of high-resolution mass spectrometry data.

  metabolomicspeptideschemical-reactions+ 3polyphenolshigh-resolution-mass-spectrometryrsoftware

  R

  •

  Other

  •0•1•12•0•Updated Jun 27, 2025Jun 27, 2025

• discovery

  Public
  Discovery provides a powerful toolset for developers who are looking to build UIs using RDF data in an a robust software development process

  scalasparqlrdf+ 5discoverysemantic-webscalajssparql-query-builderendpoint-discovery

  Scala

  •

  MIT License

  •1•1•41•2•Updated Jun 12, 2025Jun 12, 2025

• mzxml-glucosinolate-analyser

  Public
  Ion detection eligible for characterization of glucosinolate and phenolic metabolites

  Scala

  •0•0•10•3•Updated May 27, 2025May 27, 2025

• asko-reasoner-example

  Public
  try jena reasoner to infere askomics triplets...

  Java

  •0•0•0•0•Updated Feb 19, 2025Feb 19, 2025

• encoder-ontology-match-abstract

  Public
  Python

  •0•0•0•0•Updated Feb 18, 2025Feb 18, 2025

• service-flask-thermorawfileparser-openms

  Public
  A simple HTML interface for converting RAW format to MzML, MzXML, and MGF files.

  flaskmetabolomicsopenms+ 1thermofileparser

  Python

  •0•0•1•0•Updated Feb 4, 2025Feb 4, 2025

• EP2M2

  Public
  Metabolomics target analyzes manager

  websitemetabolomicsinrae+ 1p2m2

  TypeScript

  •1•2•21•0•Updated Jan 28, 2025Jan 28, 2025

• stream-reader-mzxml

  Public
  A Scala library specializing in stream processing of mzXML files, based on FS2

  scalastreamfs2+ 1mass-spectrometry

  Scala

  •0•0•1•0•Updated Jan 21, 2025Jan 21, 2025

• SubstratProduitClassifier

  Public
  Analyse des features expérimentales liées au cumul d'oxygène à l'aide de modèles de régression linéaire, quadratique et cubique. Le programme classe les features en substrats, produits, transitoires et recyclés, et exporte les résultats dans un fichier CSV

  HTML

  •0•0•1•0•Updated Jan 8, 2025Jan 8, 2025

• service-p2m2tools-api

  Public
  Service to parse the formats of the metabolomics data acquisition devices of the P2M2 platform

  Scala

  •

  MIT License

  •1•0•4•1•Updated Dec 5, 2024Dec 5, 2024

• scala-sbt

  Public
  Docker image scala-sbt

  Dockerfile

  •1•0•1•0•Updated Dec 4, 2024Dec 4, 2024

• ChEBI_REST_API

  Public
  Java

  •

  MIT License

  •0•0•0•0•Updated Oct 22, 2024Oct 22, 2024

• dataset-description-metabolites-litsc

  Public
  JavaScript

  •0•0•0•0•Updated Sep 10, 2024Sep 10, 2024

• forum-diseases-chem-nextflow

  Public
  Nextflow scripts to generate a release of the FORUM project

  Nextflow

  •0•1•0•0•Updated Jul 9, 2024Jul 9, 2024

• DiscoveryWorkout

  Public
  HTML

  •0•0•0•0•Updated Jul 7, 2024Jul 7, 2024

• plant_metabolic_flows_influx_si

  Public
  Shell

  •0•0•0•0•Updated Jul 3, 2024Jul 3, 2024

• tp-discovery-websempilot

  Public
  HTML

  •1•0•0•0•Updated Jul 2, 2024Jul 2, 2024

• workflow-kg-plants-taxon-compound

  Public
  A workflow that generates a knowledge graph from a list of DOIs using the tool '# End-to-end Relation Extraction on the natural-product literature' from IDIAP.

  Python

  •0•0•4•0•Updated May 6, 2024May 6, 2024

• facade-scalajs-N3.js

  Public
  ScalaJS facade to build N3.js application

  Scala

  •0•0•0•0•Updated Apr 15, 2024Apr 15, 2024

• facade-scalajs-comunica-query-sparql

  Public archive
  Scala.js Facade of the Comunica SPARQL RDFJS Init Actor

  Scala

  •0•0•0•0•Updated Apr 15, 2024Apr 15, 2024

• facade-scalajs-rdfxml-streaming-parser

  Public
  Scala.js Facade of the RDF/XML Streaming Parser library

  Scala

  •0•0•0•0•Updated Apr 15, 2024Apr 15, 2024

• tools-metabolomics

  Public
  Galaxy tools for metabolomics maintained by Workflow4Metabolomics

  R

  •

  GNU General Public License v3.0

  •29•0•0•0•Updated Apr 11, 2024Apr 11, 2024

• hubportal

  Public
  The P2M2 Central Hub serves as the centralized gateway to the dematerialized tools developed by the P2M2 metabolomics platform

  MIT License

  •0•0•0•0•Updated Feb 20, 2024Feb 20, 2024

• docker-XcmsViewer

  Public
  Dockerized XcmsViewer

  R

  •

  GNU General Public License v3.0

  •2•1•0•0•Updated Feb 19, 2024Feb 19, 2024

• p2m2tools

  Public
  Development of bioinformatics tools/software related to P2M2 metabolomics platform activities

  scalafunctional-programmingmetabolomics+ 2metabolomics-studiesinrae

  Scala

  •

  MIT License

  •0•2•9•0•Updated Jan 18, 2024Jan 18, 2024

• xcms-p2m2-tools

  Public
  Scala

  •

  MIT License

  •0•0•0•0•Updated Nov 17, 2023Nov 17, 2023

• mgf-p2m2-tools

  Public
  Scala parser for generic MGF mascot files containing MS/MS data

  Scala

  •

  MIT License

  •0•0•2•0•Updated Jul 22, 2023Jul 22, 2023

• ihm-githubio-gcms2isocor

  Public
  provides a simple interface for ingesting gcms files and integrating these results into isocor format

  Scala

  •

  MIT License

  •0•0•0•0•Updated Jul 7, 2023Jul 7, 2023

• service-rdf-database-deployment

  Public
  Scala

  •0•0•4•1•Updated Jun 19, 2023Jun 19, 2023

• collect-target-metabolomics-study

  Public
  Scala

  •

  MIT License

  •0•0•11•0•Updated May 5, 2023May 5, 2023