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@openneuropet Open NeuroPET

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    24 repositories

    • PET2BIDS

      Public
      PET2BIDS helps you convert your PET data into BIDS! raw PET scanner files (e.g. ecat, dicom) and additional side files like .e.g excel sheets -- paper @Joss https://doi.org/10.21105/joss.06067
      metadataconverterjsonbids
      Python
      •
      MIT License
      •22•30•9•1•Updated Sep 10, 2025Sep 10, 2025

    • petdeface

      Public
      A nipype implementation of an anatomical MR and PET defacing pipeline for BIDS datasets
      Python
      •3•3•8•4•Updated Aug 29, 2025Aug 29, 2025

    • outreach

      Public
      talks, posters, educational material, everything we do is free and open
      Jupyter Notebook
      •12•5•1•0•Updated Aug 29, 2025Aug 29, 2025

    • ezbids_docker

      Public
      A web service for semi-automated conversion of raw imaging data to BIDS
      Vue
      •
      MIT License
      •18•1•0•3•Updated Aug 29, 2025Aug 29, 2025

    • nifti_fixer

      Public
      fixes niftis that aren't quite ready for BIDS
      Python
      •0•0•2•0•Updated Jul 18, 2025Jul 18, 2025

    • petdicoms

      Public
      Collection of PET dicoms, full dataset available at https://datacatalog.publicneuro.eu/dataset/PN000001%20OpenNeuroPET%20Phantoms/V1
      0•0•0•0•Updated May 9, 2025May 9, 2025

    • ezbids_apptainer

      Public
      Shell
      •
      MIT License
      •0•0•0•0•Updated Apr 25, 2025Apr 25, 2025

    • ezbids

      Public
      A web service for semi-automated conversion of raw imaging data to BIDS
      Vue
      •
      MIT License
      •18•0•0•1•Updated Mar 28, 2025Mar 28, 2025

    • multiverse_tools

      Public
      tools helping with multiverse analyses
      R
      •
      MIT License
      •0•0•1•0•Updated Mar 5, 2025Mar 5, 2025

    • PET_pipelines

      Public
      A suite of brain PET processing pipelines
      Python
      •6•14•1•1•Updated Jan 6, 2025Jan 6, 2025

    • app-petdeface

      Public
      PET Deface Packaged as a Brainlife.io app
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 9, 2024Dec 9, 2024

    • local_bids_validation

      Public
      Python
      •
      MIT License
      •0•0•3•0•Updated Nov 12, 2024Nov 12, 2024

    • bidscoin

      Public
      BIDScoin converts your source-level neuroimaging data to BIDS
      Python
      •
      GNU General Public License v3.0
      •36•0•0•0•Updated Nov 7, 2024Nov 7, 2024

    • petutils

      Public
      Python
      •0•0•0•0•Updated Jun 11, 2024Jun 11, 2024

    • openneuropet.github.io

      Public
      OpenNeuroPET project include link with OpenNeuroPET repository, GDPR compliance, BIDS converters, templates, etc
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •1•0•1•0•Updated Dec 4, 2023Dec 4, 2023

    • BrainHack-Nordic

      Public
      BrainHack Nordic 2024 general information
      1•0•0•0•Updated Nov 28, 2023Nov 28, 2023

    • json_maj

      Public
      It updates the jsons! That's it!
      Python
      •0•2•1•0•Updated Aug 7, 2023Aug 7, 2023

    • pet-bids-derivatives-data

      Public
      Directory to showcase various examples of PET-BIDS derivatives datasets
      HTML
      •
      Apache License 2.0
      •1•0•1•0•Updated Jun 21, 2023Jun 21, 2023

    • MIBASFetcher

      Public
      Small Script/Tool That Gets MIBAS (And maybe versions of MIBAS)
      Python
      •0•0•4•0•Updated Mar 9, 2023Mar 9, 2023

    • testdata

      Public
      0•0•0•0•Updated Jan 13, 2023Jan 13, 2023

    • brainhack

      Public
      Welcome to BrainHack Nordic
      1•0•1•0•Updated Nov 1, 2022Nov 1, 2022

    • derivatives

      Public
      MATLAB
      •2•0•0•0•Updated May 7, 2022May 7, 2022

    • BrainPET-metadata-examples

      Public
      A collection of shared metadata to illustrate and learn from each other on how we store information about PET tracers and blood analyses
      1•0•0•0•Updated Jan 18, 2022Jan 18, 2022

    • molecular_atlases

      Public
      Download molecular atlases (serotonin, GABA)
      1•3•0•0•Updated Apr 26, 2021Apr 26, 2021