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    44 repositories

    • mano

      Public
      Mano - Beiwe research platform API
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•4•5•1•Updated Oct 30, 2025Oct 30, 2025

    • beiwe-backend

      Public
      Beiwe is a smartphone-based digital phenotyping research platform. This is the Beiwe backend code
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •48•70•63•2•Updated Oct 29, 2025Oct 29, 2025

    • forest

      Public
      Forest is a library for analyzing smartphone-based high-throughput digital phenotyping data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •19•35•12•2•Updated Oct 28, 2025Oct 28, 2025

    • beiwe-ios

      Public
      Beiwe is a smartphone-based digital phenotyping research platform. This is the Beiwe iOS app code. The Beiwe2 app is also available on the Apple app store to use with open source builds of the Beiwe backend.
      ios-appbeiwe
      Swift
      •
      BSD 3-Clause "New" or "Revised" License
      •15•24•31•2•Updated Oct 23, 2025Oct 23, 2025

    • summaries

      Public
      Unifying Summary Statistic Selection for Approximate Bayesian Computation
      deep-learninginformation-theoryapproximate-bayesian-computation
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 20, 2025Oct 20, 2025

    • coaloracle

      Public
      Repository for simulated genetic data presented by Nunes and Balding (2010).
      Makefile
      •
      MIT License
      •1•0•0•0•Updated Oct 15, 2025Oct 15, 2025

    • beiwe

      Public
      Beiwe is a smartphone-based digital phenotyping research platform.
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •8•13•1•2•Updated Oct 14, 2025Oct 14, 2025

    • hiv

      Public
      Bayesian Inference for Sexual Contact Networks Using Longitudinal Survey Data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Sep 29, 2025Sep 29, 2025

    • mpox-model

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Sep 3, 2025Sep 3, 2025

    • net-summary-selection

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Aug 20, 2025Aug 20, 2025

    • mdn-abc-epidemic

      Public
      Inference on parameters of a network contagion, using MDN-ABC.
      Python
      •0•0•0•0•Updated Apr 26, 2025Apr 26, 2025

    • gptools

      Public
      Gaussian processes on graphs and lattices in Stan.
      graphfftstangaussian-processes
      Python
      •
      MIT License
      •0•18•2•0•Updated Mar 17, 2025Mar 17, 2025

    • gptoolsStan

      Public archive
      This repository has been merged into https://github.com/onnela-lab/gptools/.
      bayesian-inferencegaussian-processescmdstancmdstanr
      0•1•0•0•Updated Feb 25, 2025Feb 25, 2025

    • beiwe-android

      Public
      Beiwe is a smartphone-based digital phenotyping research platform. This is the Beiwe Android app code. The Beiwe2 app is also available on the Google Play store to use with open source builds of the Beiwe backend.
      Kotlin
      •
      BSD 3-Clause "New" or "Revised" License
      •18•27•13•2•Updated Jan 15, 2025Jan 15, 2025

    • gptools-reproduction-material

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jan 3, 2025Jan 3, 2025

    • abc-uncertain-networks

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 22, 2024Nov 22, 2024

    • covariate-smoothed-layout

      Public
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Sep 20, 2024Sep 20, 2024

    • connecting-ma-network

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Aug 20, 2024Aug 20, 2024

    • temporal-configuration-model

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jul 16, 2024Jul 16, 2024

    • longitudinal-inference

      Public
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Feb 9, 2024Feb 9, 2024

    • covariate-net-vis

      Public
      Visualizing networks with nominal nodal covariates
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 9, 2024Jan 9, 2024

    • beiwe-manuals

      Public
      0•0•0•0•Updated Oct 12, 2023Oct 12, 2023

    • summaries-archive

      Public archive
      Please see https://github.com/onnela-lab/summaries for up to date code.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 4, 2023Oct 4, 2023

    • als-beiwe-passive-data

      Public
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Aug 1, 2023Aug 1, 2023

    • als-forearm-movements

      Public
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•1•0•Updated May 15, 2023May 15, 2023

    • als-wearables

      Public
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 16, 2023Jan 16, 2023

    • stb-beiwe-screen-time

      Public
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 13, 2023Jan 13, 2023

    • mst

      Public
      Inferring the minimum spanning tree from a sample network
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Sep 15, 2022Sep 15, 2022

    • covid-travel

      Public
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Apr 30, 2022Apr 30, 2022

    • mech-mle

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Jan 22, 2022Jan 22, 2022