Repositories list

• opal

  Public
  OBiBa’s core database application for biobanks or epidemiological studies.

  Java

  •

  GNU General Public License v3.0

  •20•30•21•1•Updated Oct 21, 2025Oct 21, 2025

• agate

  Public
  OBiBa's user ID provider.

  Java

  •

  GNU General Public License v3.0

  •7•4•4•3•Updated Oct 21, 2025Oct 21, 2025

• opalr

  Public
  Opal R and Datashield utils

  R

  •3•3•4•0•Updated Oct 18, 2025Oct 18, 2025

• odbc.resourcer

  Public
  R package to access databases exposing a ODBC interface

  R

  •

  GNU Lesser General Public License v2.1

  •0•0•0•0•Updated Oct 17, 2025Oct 17, 2025

• helm-charts

  Public
  OBiBa Helm Charts

  Smarty

  •

  MIT License

  •0•2•0•0•Updated Oct 17, 2025Oct 17, 2025

• obiba.github.io

  Public
  Obiba Website

  HTML

  •2•0•0•0•Updated Oct 17, 2025Oct 17, 2025

• docker-opal

  Public
  Shell

  •

  GNU General Public License v3.0

  •11•8•5•0•Updated Oct 15, 2025Oct 15, 2025

• mica2

  Public
  Mica is a web portal for epidemiological study consortia.

  Java

  •

  GNU General Public License v3.0

  •15•11•13•20•Updated Oct 7, 2025Oct 7, 2025

• docker-mica

  Public
  Shell

  •

  GNU General Public License v3.0

  •3•0•0•0•Updated Oct 2, 2025Oct 2, 2025

• mica-doc

  Public
  Mica documentation

  Python

  •2•0•1•0•Updated Oct 1, 2025Oct 1, 2025

• agate-doc

  Public
  Agate documentation

  Python

  •0•1•0•0•Updated Oct 1, 2025Oct 1, 2025

• agate-python-client

  Public
  Python command lines for accessing Agate web services.

  Python

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Oct 1, 2025Oct 1, 2025

• rockr

  Public
  R client implementation of the R server REST API

  R

  •

  Other

  •0•0•0•0•Updated Sep 28, 2025Sep 28, 2025

• fhir.resourcer

  Public
  R package to access to HL7 FHIR servers

  R

  •

  GNU Lesser General Public License v2.1

  •0•0•0•0•Updated Sep 26, 2025Sep 26, 2025

• micar

  Public
  R package for accessing Mica2 web services

  R

  •0•0•1•0•Updated Sep 26, 2025Sep 26, 2025

• amberr

  Public
  Amber R client

  R

  •0•0•0•0•Updated Sep 26, 2025Sep 26, 2025

• s3.resourcer

  Public
  R package to access S3 compatible object stores as resources

  JavaScript

  •

  GNU Lesser General Public License v2.1

  •3•0•0•0•Updated Sep 26, 2025Sep 26, 2025

• resourcer

  Public
  R

  •

  GNU Lesser General Public License v2.1

  •6•2•3•0•Updated Sep 26, 2025Sep 26, 2025

• opal-doc

  Public
  Opal documentation

  Python

  •2•2•1•0•Updated Sep 25, 2025Sep 25, 2025

• plugins

  Public
  OBiBa plugins repository

  0•0•0•0•Updated Sep 13, 2025Sep 13, 2025

• opal-datasource-readxl

  Public
  Opal datasource using R packages readxl and writexl

  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 13, 2025Sep 13, 2025

• magma

  Public
  Data and meta-data abstraction layer.

  Java

  •

  GNU General Public License v3.0

  •15•7•0•0•Updated Sep 6, 2025Sep 6, 2025

• iac-helm-datashield

  Public
  Deployment package for installing DataSHIELD in a Secure Data Environment

  Smarty

  •

  MIT License

  •1•0•0•0•Updated Aug 31, 2025Aug 31, 2025

• rock-doc

  Public
  Rock R server documentation

  Python

  •0•0•0•0•Updated Aug 22, 2025Aug 22, 2025

• docker-rock

  Public
  Rock R server in a Docker container

  Shell

  •0•0•0•0•Updated Aug 22, 2025Aug 22, 2025

• rock

  Public
  R server with a REST API

  Java

  •

  GNU General Public License v3.0

  •1•3•1•1•Updated Aug 22, 2025Aug 22, 2025

• docker-r

  Public
  Docker image with R inside and a lot of system libs

  Dockerfile

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Aug 22, 2025Aug 22, 2025

• docker-agate

  Public
  Shell

  •

  GNU General Public License v3.0

  •3•0•1•0•Updated Aug 14, 2025Aug 14, 2025

• docker-amber

  Public
  Docker images for Amber server and apps

  Dockerfile

  •0•0•0•0•Updated Jul 18, 2025Jul 18, 2025

• amber-studio

  Public
  Content management app for Amber

  vuequasar

  Vue

  •

  MIT License

  •1•1•5•0•Updated Jul 18, 2025Jul 18, 2025