Neurostats

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25 repositories

pub-template
Public
HTML
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MIT License
•0•0•0•0•Updated Aug 7, 2025Aug 7, 2025
spot_evals
Public
Python
•0•0•0•0•Updated Aug 4, 2025Aug 4, 2025
skggm
Public
Gaussian graphical model estimation for scikit-learn
Python
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MIT License
•45•2•0•0•Updated May 7, 2025May 7, 2025
GGLasso
Public
A Python package for General Graphical Lasso computation
Python
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MIT License
•14•0•0•0•Updated Mar 17, 2022Mar 17, 2022
fmri-site-effects
Public
Uses regression and factor model approach to correct for site effects in fMRI volumes
functional-programming reliability fmri fmri-preproc tms-fmri batch-effects correlation-matrices site-effects
MATLAB
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MIT License
•1•0•6•0•Updated Nov 20, 2021Nov 20, 2021
skmediate
Public
Python
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Other
•4•0•0•1•Updated Sep 22, 2021Sep 22, 2021
hbmhack-confounds
Public
Conquering confounds and covariates in machine learning
Python
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Other
•14•0•0•0•Updated Jun 17, 2020Jun 17, 2020
jekyll-now
Public
Build a Jekyll blog in minutes, without touching the command line.
CSS
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MIT License
•35k•0•0•0•Updated Jun 10, 2020Jun 10, 2020
2018-tms-netsci
Public
MATLAB
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BSD 3-Clause "New" or "Revised" License
•0•0•4•0•Updated Mar 26, 2020Mar 26, 2020
change-scores
Public
A literature review of all the papers on how (not) to measure changes from a baseline or other comparison in a pre-post design.
statistics percent-change annotated-bibliography ancova contrastive-learning pretest-posttest change-scores statistical-paradoxes change-from-baseline differential-inference
0•0•0•0•Updated Feb 21, 2020Feb 21, 2020
story
Public
Beautiful responsive Hugo blog theme focused on simplicity and elegance, with many extra features including presentations, math typesetting, music notation, and search.
template hugo-theme website
JavaScript
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MIT License
•61•0•0•0•Updated Oct 5, 2019Oct 5, 2019
tutorial-prni-2017
Public
This repository contains iPython notebooks that run on the octave kernel to accompany tutorial and slides presented at PRNI
neuroimaging fmri covariance-matrix batch-effects prni2017 multi-site-imaging covariance-estimation
Jupyter Notebook
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BSD 2-Clause "Simplified" License
•1•2•1•0•Updated Aug 18, 2018Aug 18, 2018
netsci
Public
Network Science toolbox focused on generalizing centrality and community structure
community-detection network-flow network-science centrality motifs conductance
MATLAB
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BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Jun 22, 2018Jun 22, 2018
awesome-site-effects
Public
Resources to literature and tools on how to address unwanted between site variation in neuroimaging
blog
BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Jun 16, 2018Jun 16, 2018
neurocombat
Public
python / numpy / pandas / patsy version of ComBat for removing batch effects.
Python
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MIT License
•44•1•0•0•Updated Jun 10, 2018Jun 10, 2018
MOnotebook
Public
BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated May 11, 2018May 11, 2018
lesson-template
Public
A lesson template for tutorials
JavaScript
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Other
•9•0•0•0•Updated Apr 22, 2018Apr 22, 2018
parcor
Public
Partial correlation (w. shrinkage estimation) networks and subsequent network analysis
functional-programming network graphical-models fmri network-estimation
MATLAB
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BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Jan 29, 2018Jan 29, 2018
sinc
Public
Statistical Inference for Network Centrality
systems-biology network-science neuroscience statistical-analysis statistical-inference graphical-models neuroinformatics network-analysis covariance-matrix regulatory-network
0•1•0•0•Updated Apr 22, 2017Apr 22, 2017
connectivity-diagnostics
Public
A set of scripts for visual and quantitative checks of data based on spatio-temporal correlation structure in fMRI data
quality-control functional-programming eeg diagnostics fmri covariance spatio-temporal correlation-matrices
MATLAB
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GNU General Public License v3.0
•0•0•3•0•Updated Mar 29, 2017Mar 29, 2017
conf2017-factormodel
Public
Approximate Factor Models for Artifact Free Correlation Estimation
paper neuroimaging factor-analysis factor-models
TeX
•0•0•0•0•Updated Mar 20, 2017Mar 20, 2017
jf2016-skggm
Public
Tutorials to estimate inverse covariance matrices using the skggm package
graphical-models tutorial binder
Jupyter Notebook
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GNU General Public License v3.0
•1•4•0•0•Updated Oct 10, 2016Oct 10, 2016
pglasso
Public
Pathway Graphical Lasso
Python
•4•0•0•0•Updated Jun 21, 2016Jun 21, 2016
neurofinder
Public
Benchmarking platform and competition for source extraction from imaging data
Python
•24•0•0•0•Updated Jul 29, 2015Jul 29, 2015
Dream2014
Public
Submission to Alzheimer's Disease Prediction Challenge 2014
CSS
•0•0•0•0•Updated Oct 17, 2014Oct 17, 2014