Repositories list

• jaxqtl

  Public
  Flexible, scalable, QTL analyses using generalized linear models implemented in JAX

  glmqtl-mappingjax+ 1molqtl

  Python

  •

  MIT License

  •0•9•12•0•Updated Jul 30, 2025Jul 30, 2025

• traceax

  Public
  Stochastic trace estimation using JAX

  statisticspython3machine-learn+ 2jaxtrace-est

  Python

  •

  Apache License 2.0

  •3•15•2•1•Updated Jul 24, 2025Jul 24, 2025

• sushie

  Public
  Software to perform multi-ancestry SNP fine-mapping on molecular data

  pythongwasgenetics+ 7bayesian-inferencevariational-inferenceeqtlsusiejaxfine-mappingpqtl

  Python

  •

  MIT License

  •3•25•1•0•Updated Jul 1, 2025Jul 1, 2025

• sushie-project-codes

  Public
  The analysis codes for sushie project

  R

  •0•0•0•0•Updated May 31, 2025May 31, 2025

• perturbvi

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated May 20, 2025May 20, 2025

• jaxqtl_analysis

  Public
  Analysis code for jaxqtl paper

  R

  •

  MIT License

  •0•0•0•0•Updated May 7, 2025May 7, 2025

• FactorGo

  Public
  Software to infer latent pleiotropic components from GWAS summary data

  gwasvariational-inferencejax+ 1gwas-summary-statistics

  Python

  •

  MIT License

  •0•15•0•0•Updated Jan 30, 2025Jan 30, 2025

• scfm

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Jan 2, 2025Jan 2, 2025

• ma-focus

  Public
  MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets

  Python

  •

  GNU General Public License v3.0

  •7•34•6•0•Updated Apr 26, 2024Apr 26, 2024

• geneax

  Public
  Python

  •

  Apache License 2.0

  •0•0•3•0•Updated Feb 21, 2024Feb 21, 2024

• susiepca

  Public
  Scalable Ultra-Sparse Bayesian PCA

  pythonmachine-learningpca+ 4bayesian-inferencefactor-analysisvariational-inferencejax

  Python

  •

  MIT License

  •6•29•4•0•Updated Feb 13, 2024Feb 13, 2024

• gdf15_analyses

  Public
  R

  •0•0•0•0•Updated Sep 14, 2023Sep 14, 2023

• twas_sim

  Public
  Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform GWAS/TWAS on complex trait.

  pythongwaseqtl+ 2twassimulation

  Shell

  •4•26•1•0•Updated Jun 18, 2023Jun 18, 2023

• FactorGo_analysis

  Public
  Analysis code for FactorGo project

  R

  •0•1•0•0•Updated Mar 24, 2023Mar 24, 2023

• stroke_twas

  Public
  0•0•0•0•Updated Dec 8, 2022Dec 8, 2022

• .github

  Public
  0•0•0•0•Updated Nov 2, 2022Nov 2, 2022

• twas_sim_paper

  Public
  0•0•0•0•Updated Sep 14, 2022Sep 14, 2022

• MA-FOCUS-data-code

  Public
  Data and code Availability for MA-FOCUS Project

  R

  •1•1•0•0•Updated Jun 21, 2022Jun 21, 2022