hip-satomi

All

11 repositories

MLP-Autofocusing
Public
Publicized code for a standalone ML pipeline that predicts Z-stack focus offsets from single microscopy images using wavelet/geometric features and MLPs, achieving ~0.1 µm MAE with <100 ms inference for event-driven microfluidic imaging.
opencv computer-vision multilayer-perceptron-network focus-prediction
Python
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MIT License
•0•0•0•0•Updated Aug 25, 2025Aug 25, 2025
Instance-Segmentation-Benchmark
Public
0•0•0•0•Updated Aug 1, 2025Aug 1, 2025
OmeroStaticUpload
Public
Python
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MIT License
•0•0•1•0•Updated Jan 10, 2025Jan 10, 2025
SegServe
Public
deep-learning inference segmentation cell-segmentation
Python
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MIT License
•0•0•0•0•Updated Jan 10, 2025Jan 10, 2025
ObiWan-Microbi
Public
Omero based integrated Workflow for annotating Microbes in the Cloud
docker deep-learning data-management platform-independent omero annotation-tool cell-segmentation human-in-the-loop microbes
Dockerfile
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MIT License
•2•5•1•0•Updated Nov 16, 2023Nov 16, 2023
Yolov5-Executor
Public
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Nov 16, 2023Nov 16, 2023
SegUI
Public
image-annotation annotation human-in-the-loop semi-automatic
TypeScript
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MIT License
•0•0•0•0•Updated Nov 15, 2023Nov 15, 2023
mwe-executor
Public
Demonstrates custom executor with a minimal example
Python
•0•0•0•0•Updated Nov 15, 2023Nov 15, 2023
MMDetection-Executor
Public
Python
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MIT License
•0•0•0•0•Updated Nov 14, 2023Nov 14, 2023
microbeSEG
Public
Deep learning-based instance segmentation tool for roundish objects in 2D and 2D+t data
deep-learning segmentation omero nucleus-segmentation cell-segmentation time-lapse-imaging microbes
Python
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MIT License
•1•8•3•0•Updated Jan 26, 2023Jan 26, 2023
Cellpose-Executor
Public
Python
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MIT License
•0•0•1•0•Updated Jan 11, 2023Jan 11, 2023