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    22 repositories

    • NetFlow3D

      Public
      Python
      •1•2•1•0•Updated Jun 27, 2025Jun 27, 2025

    • Analysis_Code_Comprehensive_Evaluation_MPRA_and_STARR_seq

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Jun 24, 2025Jun 24, 2025

    • PIONEER2.0

      Public
      Python
      •
      GNU General Public License v2.0
      •0•11•1•0•Updated Jun 5, 2025Jun 5, 2025

    • DeepDETAILS-analysis

      Public
      Python
      •1•0•0•0•Updated Apr 26, 2025Apr 26, 2025

    • DeepDETAILS

      Public
      Deep-learning-based DEconvolution of Tissue profiles with Accurate Interpretation of Locus-specific Signals
      Python
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Apr 22, 2025Apr 22, 2025

    • 3D-Viral-Human

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Apr 5, 2025Apr 5, 2025

    • xpRegGenomeLib

      Public
      Xiuqi's Scripts for Regulatory Genome analysis.
      Python
      •
      MIT License
      •2•0•0•0•Updated Feb 3, 2025Feb 3, 2025

    • PIONEER

      Public
      Python
      •
      Apache License 2.0
      •3•26•2•0•Updated Dec 20, 2024Dec 20, 2024

    • superphos-web-code

      Public
      Yu lab repo for superphos website
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Dec 10, 2024Dec 10, 2024

    • ppi-evaluation

      Public
      Python
      •0•0•0•0•Updated Dec 9, 2024Dec 9, 2024

    • hint-web

      Public
      Web application for HINT
      HTML
      •
      MIT License
      •0•0•0•0•Updated Nov 22, 2024Nov 22, 2024

    • HINT_preprocess

      Public
      Data pre-processing pipeline for HINT
      Jupyter Notebook
      •0•0•0•0•Updated Oct 28, 2024Oct 28, 2024

    • 3D-Viralhuman-Web

      Public
      Django Web Server source code
      JavaScript
      •
      Apache License 2.0
      •1•0•0•0•Updated Jul 19, 2024Jul 19, 2024

    • structural-interactome-features

      Public
      Toolkit to derive structural features for interacting proteins
      Python
      •
      MIT License
      •1•0•0•0•Updated Jul 15, 2024Jul 15, 2024

    • ECLAIR

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 22, 2024Jun 22, 2024

    • interact-ppi

      Public
      HTML
      •0•0•0•0•Updated May 30, 2024May 30, 2024

    • interactomeinsider-web

      Public
      Dockerized version of the interactome insider website
      HTML
      •
      MIT License
      •0•0•0•0•Updated May 21, 2024May 21, 2024

    • infertilitygenetics-web

      Public
      Web files for the infertilitygenetics site
      HTML
      •
      MIT License
      •0•0•0•0•Updated May 2, 2024May 2, 2024

    • riceinteractome-web

      Public
      Web files for the rice interactome
      HTML
      •
      MIT License
      •0•0•0•0•Updated May 2, 2024May 2, 2024

    • folddock-utils

      Public
      toolkit to parse and automate folddock running in a cluster.
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 20, 2024Feb 20, 2024

    • masif-mapper

      Public
      Scripts to process MaSIF files
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 9, 2024Jan 9, 2024

    • pssm-kinase-sensors

      Public
      search tool for kinase sensors based on PSSMs
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 1, 2023Dec 1, 2023