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    70 repositories

    • bioformats2raw

      Public
      Bio-Formats image file format to raw format converter
      ome-zarr-converter
      Java
      •
      GNU General Public License v2.0
      •36•96•18•3•Updated Aug 15, 2025Aug 15, 2025

    • omero-ms-pixel-buffer

      Public
      OMERO pixel buffer Vert.x asynchronous microservice server
      Java
      •
      GNU General Public License v2.0
      •6•1•0•0•Updated Aug 13, 2025Aug 13, 2025

    • omero-ms-image-region

      Public
      OMERO image region Vert.x asynchronous microservice server
      Java
      •
      GNU General Public License v2.0
      •12•1•3•5•Updated Aug 13, 2025Aug 13, 2025

    • omero-ms-thumbnail

      Public
      OMERO thumbnail Vert.x asynchronous microservice server
      Java
      •
      GNU General Public License v2.0
      •9•1•1•0•Updated Aug 13, 2025Aug 13, 2025

    • omero-ms-core

      Public
      OMERO Vert.x microservice core
      Java
      •
      GNU General Public License v2.0
      •6•1•0•0•Updated Aug 13, 2025Aug 13, 2025

    • raw2ometiff

      Public
      Raw format to OME-TIFF converter
      Java
      •
      GNU General Public License v2.0
      •23•55•4•1•Updated Aug 5, 2025Aug 5, 2025

    • qupath-extension-omero-web

      Public
      QuPath extension to work with images through OMERO's web API
      Java
      •
      GNU General Public License v3.0
      •11•1•2•0•Updated Jul 30, 2025Jul 30, 2025

    • omero-pc-steward

      Public
      OMERO Process Container Steward
      Java
      •
      GNU General Public License v2.0
      •3•0•0•0•Updated Jun 20, 2025Jun 20, 2025

    • omero-zarr-pixel-buffer

      Public
      OMERO Zarr Pixel Buffer Implementation
      Java
      •
      GNU General Public License v2.0
      •9•1•7•2•Updated Jun 18, 2025Jun 18, 2025

    • omero2pandas

      Public
      Exchange data between OMERO.tables and pandas DataFrames.
      pandasomeroomero-py
      Python
      •
      GNU General Public License v3.0
      •4•5•2•0•Updated Jun 10, 2025Jun 10, 2025

    • prokaryote

      Public
      CellProfiler’s Java dependencies
      Java
      •
      GNU General Public License v3.0
      •11•0•0•0•Updated May 14, 2025May 14, 2025

    • ome-omero-roitool

      Public
      OME and OMERO ROI tool
      Java
      •
      GNU General Public License v2.0
      •7•5•0•0•Updated Apr 24, 2025Apr 24, 2025

    • omero-user-token

      Public
      OMERO user token
      Python
      •
      GNU General Public License v2.0
      •5•3•1•0•Updated Feb 4, 2025Feb 4, 2025

    • CellProfiler

      Public
      An open-source application for biological image analysis
      Python
      •
      Other
      •402•0•0•0•Updated Dec 2, 2024Dec 2, 2024

    • core

      Public
      Python
      •
      Other
      •24•0•0•0•Updated Dec 2, 2024Dec 2, 2024

    • python-bioformats

      Public
      Read and write life sciences file formats
      Python
      •
      Other
      •47•0•0•0•Updated Nov 8, 2024Nov 8, 2024

    • zarr2zarr

      Public
      Experimental Java library for converting Zarr v2 to v3. This is a proof of concept implemented as part of https://ome.github.io/ome2024-ngff-challenge/ and not expected to be used in production
      Java
      •
      GNU General Public License v2.0
      •4•0•2•0•Updated Sep 13, 2024Sep 13, 2024

    • libjpeg-turbo-java

      Public
      libjpeg-turbo Java build
      Java
      •2•0•1•2•Updated Aug 5, 2024Aug 5, 2024

    • github-action-ssh

      Public
      🔐 Simple GitHub Action to run commands on a remote server using SSH.
      JavaScript
      •
      MIT License
      •82•0•0•0•Updated Jul 4, 2024Jul 4, 2024

    • zeroc-ice-py-linux-aarch64

      Public
      Builds ZeroC Ice Python manylinux_2_28 wheel packages for Linux aarch64.
      Dockerfile
      •0•0•0•0•Updated Jun 20, 2024Jun 20, 2024

    • zeroc-ice-ubuntu2404-x86_64

      Public
      Ubuntu 24.04 x86_64 ZeroC Ice Builder
      Dockerfile
      •0•0•0•0•Updated Jun 19, 2024Jun 19, 2024

    • NGFF-Converter

      Public
      NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF
      Java
      •
      GNU General Public License v2.0
      •7•29•7•1•Updated Jun 4, 2024Jun 4, 2024

    • zeroc-ice-py-macos-universal2

      Public
      Builds ZeroC Ice Python wheel packages for macOS universal2 (x86_64 + arm64)
      2•0•0•0•Updated Mar 25, 2024Mar 25, 2024

    • zeroc-ice-py-win-x86_64

      Public
      Builds ZeroC Ice Python wheel packages for Windows (x86_64, Visual Studio 2019)
      1•0•0•0•Updated Mar 25, 2024Mar 25, 2024

    • zeroc-ice-py-patches

      Public
      Patches for ZeroC Ice Python builds
      2•0•0•0•Updated Mar 25, 2024Mar 25, 2024

    • jxrlib

      Public
      C
      •10•10•6•2•Updated Mar 15, 2024Mar 15, 2024

    • zeroc-ice-py-linux-x86_64

      Public
      Builds ZeroC Ice Python manylinux_2_28 wheel packages for Linux x86_64.
      Dockerfile
      •2•2•1•0•Updated Feb 2, 2024Feb 2, 2024

    • omero-ldaptool

      Public
      Command line tool for working with OMERO and LDAP
      Java
      •
      GNU General Public License v2.0
      •3•0•0•0•Updated Jan 15, 2024Jan 15, 2024

    • zeroc-ice-rhel9-x86_64

      Public
      Builds ZeroC Ice packages for RHEL 9 x86_64.
      Dockerfile
      •2•0•0•0•Updated Nov 30, 2023Nov 30, 2023

    • zeroc-ice-py-macos-x86_64

      Public
      Builds Zeroc Ice Python wheel packages for macOS x86_64
      3•0•0•0•Updated Nov 30, 2023Nov 30, 2023