Gerstein Lab
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132 repositories
- MedAgentsBench: Benchmarking Thinking Models and Agent Frameworks for Complex Medical Reasoning https://arxiv.org/abs/2503.07459
- BioCoder: A Benchmark for Bioinformatics Code Generation with Large Language Models https://arxiv.org/abs/2308.16458
- [ICLR 2025]ChemAgent: Self-updating Library in Large Language Models Improves Chemical Reasoning https://arxiv.org/abs/2501.06590
- ML-Bench: Evaluating Large Language Models and Agents for Machine Learning Tasks on Repository-Level Code (https://arxiv.org/abs/2311.09835)
- BC-Design: A Biochemistry-Aware Framework for High-Precision Inverse Protein Folding https://www.biorxiv.org/content/10.1101/2024.10.28.620755v2
brainPgene
PublicCellForge
Public- [ACL 2025] Graph-guided agentic framework for code localization https://arxiv.org/abs/2503.09089
GenAI4Drug
Public- [EMNLP 2024] MIMIR: A Streamlined Platform for Personalized Agent Tuning in Domain Expertise https://arxiv.org/abs/2404.04285
PPT
Public