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    12 repositories

    • mcl

      Public
      Graph clustering by flow simulation
      C
      •
      Other
      •2•6•0•0•Updated Jul 8, 2025Jul 8, 2025

    • taxtastic

      Public
      Create and maintain phylogenetic "reference packages" of biological sequences.
      Python
      •
      GNU General Public License v3.0
      •11•22•11•1•Updated Jun 10, 2025Jun 10, 2025

    • yapp

      Public
      Yet another pplacer pipeline
      Python
      •0•0•4•2•Updated Oct 31, 2024Oct 31, 2024

    • deenurp

      Public
      16S rRNA gene sequence curation and phylogenetic reference set creation
      Python
      •
      GNU General Public License v3.0
      •3•4•20•1•Updated Sep 19, 2024Sep 19, 2024

    • seqmagick

      Public
      An imagemagick-like frontend to Biopython SeqIO
      Python
      •
      GNU General Public License v3.0
      •22•116•15•1•Updated Mar 18, 2024Mar 18, 2024

    • nestly

      Public
      Make and use nested directory trees corresponding to combinatorial choices of parameters
      Python
      •
      MIT License
      •1•20•5•0•Updated Apr 23, 2017Apr 23, 2017

    • ampliconnoise

      Public
      A python front end for Chris Quince's AmpliconNoise c code
      C
      •
      GNU General Public License v3.0
      •0•5•1•0•Updated Jul 2, 2015Jul 2, 2015

    • biopy

      Public
      Automatically exported from code.google.com/p/biopy
      Python
      •0•1•0•0•Updated Mar 14, 2015Mar 14, 2015

    • prepdrm

      Public
      Analysis pipeline for identifying low frequency drug resistance mutations (DRMs) in samples from the Partners PrEP study
      C
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 30, 2014Jun 30, 2014

    • mutgen

      Public
      Generate mutations under a motif based mutation model
      Python
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Jun 19, 2014Jun 19, 2014

    • microbiome-demo

      Public
      Demonstration files and scripts for our high-throughput sequencing analysis pipeline
      Shell
      •0•6•3•0•Updated Feb 11, 2014Feb 11, 2014

    • sekhon_fisher

      Public
      Python implementation of Sekhon's Bayesian alternative to Fisher's exact test
      Python
      •
      GNU General Public License v3.0
      •0•2•1•0•Updated Oct 25, 2012Oct 25, 2012