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    • CoTox

      Public
      Python
      0000Updated Jul 31, 2025Jul 31, 2025
    • [ACL 2025] Outlier-Safe Pre-Training for Robust 4-Bit Quantization of Large Language Models
      Python
      42910Updated Jul 30, 2025Jul 30, 2025
    • Monet

      Public
      [ICLR 2025] Monet: Mixture of Monosemantic Experts for Transformers
      Python
      47000Updated Jun 23, 2025Jun 23, 2025
    • KitchenScale: Learning Food Numeracy from Recipes through Context-Aware Ingredient Quantity Prediction
      Python
      1700Updated Jun 4, 2025Jun 4, 2025
    • EquiCPI

      Public
      Python
      1800Updated Jun 3, 2025Jun 3, 2025
    • [ACL 2025] Does Time Have Its Place? Temporal Heads: Where Language Models Recall Time-specific Information
      Jupyter Notebook
      0610Updated Jun 2, 2025Jun 2, 2025
    • ANGEL

      Public
      Learning from Negative samples for Biomedical Generative Entity Linking
      Python
      11700Updated May 25, 2025May 25, 2025
    • Python
      0000Updated May 16, 2025May 16, 2025
    • RetPO

      Public
      [NAACL 2025 Findings] Ask Optimal Questions: Aligning Large Language Models with Retriever's Preference in Conversational Search
      Python
      0440Updated Apr 30, 2025Apr 30, 2025
    • Jupyter Notebook
      0000Updated Apr 15, 2025Apr 15, 2025
    • RAG2

      Public
      [NAACL '25] Rationale-Guided Retrieval Augmented Generation for Medical Question Answering
      Python
      12810Updated Mar 11, 2025Mar 11, 2025
    • DeepAries

      Public
      Python
      0200Updated Mar 10, 2025Mar 10, 2025
    • [ICLR 2025] ChroKnowledge: Unveiling Chronological Knowledge of Language Models in Multiple Domains
      Python
      01600Updated Mar 4, 2025Mar 4, 2025
    • GPO-VAE

      Public
      Python
      0100Updated Feb 11, 2025Feb 11, 2025
    • Python
      1900Updated Jan 19, 2025Jan 19, 2025
    • ETHIC

      Public
      [NAACL 2025] ETHIC: Evaluating Large Language Models on Long-Context Tasks with High Information Coverage
      Python
      01410Updated Jan 17, 2025Jan 17, 2025
    • Python
      0300Updated Jan 12, 2025Jan 12, 2025
    • BADGER

      Public
      Python
      0100Updated Jan 10, 2025Jan 10, 2025
    • ParaCLIP

      Public
      Fine-tuning CLIP Text Encoders with Two-step Paraphrasing (EACL 2024, Findings)
      Python
      1900Updated Nov 23, 2024Nov 23, 2024
    • CookingSense: A Culinary Knowledgebase with Multidisciplinary Assertions (LREC-COLING 2024)
      Python
      01800Updated Oct 9, 2024Oct 9, 2024
    • CompAct

      Public
      [EMNLP 2024] CompAct: Compressing Retrieved Documents Actively for Question Answering
      Python
      33300Updated Sep 20, 2024Sep 20, 2024
    • DMIS at BioCreative VII NLMChem Track
      Python
      1500Updated Sep 11, 2024Sep 11, 2024
    • OLAPH

      Public
      OLAPH: Improving Factuality in Biomedical Long-form Question Answering
      Python
      53910Updated Sep 10, 2024Sep 10, 2024
    • EMNLP 2022: Biomedical NER for the Enterprise with Distillated BERN2 and the Kazu Framework
      Python
      11110Updated Aug 29, 2024Aug 29, 2024
    • MulinforCPI: enhancing precision of compound-protein interaction prediction through novel perspectives on multi-level information integration
      Python
      41000Updated Jun 20, 2024Jun 20, 2024
    • LAPIS

      Public
      Python
      0501Updated May 20, 2024May 20, 2024
    • [ISMB '24] Self-BioRAG: Improving Medical Reasoning through Retrieval and Self-Reflection with Retrieval-Augmented Large Language Models
      Python
      96310Updated Apr 4, 2024Apr 4, 2024
    • BERN2

      Public
      BERN2: an advanced neural biomedical namedentity recognition and normalization tool
      Python
      44191150Updated Mar 28, 2024Mar 28, 2024
    • MolPLA

      Public
      Python
      1500Updated Mar 13, 2024Mar 13, 2024
    • ReSimNet

      Public
      Implementation of ReSimNet for drug response similarity prediction
      Jupyter Notebook
      164010Updated Dec 20, 2023Dec 20, 2023