Repositories list

• miniscope_2s-validation

  Public
  validation datasets for miniscope 2s

  HTML

  •0•0•0•0•Updated Jun 21, 2025Jun 21, 2025

• ezTrack

  Public
  Free, platform independent, behavior tracking software.

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •44•139•6•0•Updated Jun 20, 2025Jun 20, 2025

• RetrospectiveMemoryLinkingData_2024

  Public
  datapoints representing all data in Zaki et al., Nature, 2024

  Jupyter Notebook

  •0•0•0•0•Updated Mar 24, 2025Mar 24, 2025

• Miniscope2C

  Public
  v4-based 2 color miniscope using 2 CMOS sensors

  HTML

  •0•0•0•0•Updated Jan 20, 2025Jan 20, 2025

• minian

  Public
  miniscope analysis pipeline with interactive visualizations

  Python

  •

  GNU General Public License v3.0

  •45•95•60•10•Updated Jul 19, 2024Jul 19, 2024

• music-space

  Public
  A music space for the lab

  Python

  •

  GNU General Public License v3.0

  •0•0•1•0•Updated Jun 5, 2024Jun 5, 2024

• minian-validation

  Public
  repo containing all validations and benchmarking of minian

  HTML

  •2•0•0•0•Updated Jan 31, 2024Jan 31, 2024

• MazeProjects

  Public
  Code for analyses on circular track. linear track, open field, and T-maze.

  Jupyter Notebook

  •2•1•0•0•Updated Feb 7, 2023Feb 7, 2023

• minian-feedstock

  Public
  A conda-smithy repository for minian.

  Shell

  •

  BSD 3-Clause "New" or "Revised" License

  •4•0•0•0•Updated Jul 19, 2022Jul 19, 2022

• minian_paper_data

  Public
  repository holding scripts to reproduce figures in minian paper

  Jupyter Notebook

  •1•0•0•0•Updated May 10, 2022May 10, 2022

• bioconda-recipes

  Public archive
  Conda recipes for the bioconda channel.

  Shell

  •3.6k•0•0•0•Updated Apr 27, 2021Apr 27, 2021

• GettingStarted

  Public
  0•2•0•0•Updated Mar 5, 2019Mar 5, 2019