Repositories list

• cbioportal-frontend

  Public
  React Frontend of cBioPortal 🎉

  reactmobxcancer-genomics

  TypeScript

  •

  GNU Affero General Public License v3.0

  •340•124•0•28•Updated Sep 15, 2025Sep 15, 2025

• cbioportal

  Public
  cBioPortal for Cancer Genomics

  visualizationscienceprecision-medicine+ 1cancer-genomics

  Java

  •

  GNU Affero General Public License v3.0

  •719•855•293•34•Updated Sep 11, 2025Sep 11, 2025

• datahub

  Public
  A centralized location for storing curated data from cBioPortal

  HTML

  •127•194•135•10•Updated Sep 11, 2025Sep 11, 2025

• session-service

  Public
  Java

  •19•7•11•1•Updated Sep 8, 2025Sep 8, 2025

• oncotree

  Public
  Java

  •

  Creative Commons Attribution 4.0 International

  •29•45•31•10•Updated Sep 8, 2025Sep 8, 2025

• installation-map

  Public
  cBioPortal Installation Map

  TypeScript

  •4•0•0•0•Updated Sep 7, 2025Sep 7, 2025

• cbioportal-core

  Public
  Externalized cBioPortal Core

  Java

  •23•2•22•6•Updated Sep 5, 2025Sep 5, 2025

• cbioportal-docker-compose

  Public
  Run cBioPortal using Docker Compose

  Shell

  •50•20•2•3•Updated Sep 5, 2025Sep 5, 2025

• cbioportal-test

  Public
  Tests for cBioPortal.

  HTML

  •

  MIT License

  •3•0•0•0•Updated Aug 25, 2025Aug 25, 2025

• cbioportal-mcp

  Public
  Python

  •1•0•0•0•Updated Jul 23, 2025Jul 23, 2025

• h5ad2cbioportaldb

  Public
  Python CLI tool for importing h5ad single-cell files into cBioPortal's ClickHouse database

  Python

  •0•0•0•0•Updated Jun 30, 2025Jun 30, 2025

• cBioPubChat

  Public
  LLM-powered chatbot for exploring cBioPortal publications.

  Python

  •1•1•0•1•Updated Jun 12, 2025Jun 12, 2025

• cbio-case-summarizer

  Public
  LLM generated summaries for cases in cBioPortal

  Python

  •

  MIT License

  •0•0•0•1•Updated Jun 5, 2025Jun 5, 2025

• datahub-study-curation-tools

  Public
  Contains tools used by cBioPortal data curators when preparing data for upload into the datahub repos.

  HTML

  •

  GNU Affero General Public License v3.0

  •16•19•1•4•Updated May 27, 2025May 27, 2025

• .github

  Public
  README for cBioPortal Org Page

  1•0•0•1•Updated Apr 25, 2025Apr 25, 2025

• temp-genie-page

  Public
  HTML

  •0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

• GSoC

  Public
  Documentation repository of Google Summer of Code (GSoC) project ideas for cBioPortal and related projects

  49•134•28•0•Updated Feb 27, 2025Feb 27, 2025

• cbiohubpy

  Public
  Python package and CLI tool simplifying the analysis of data from cBioPortal

  Python

  •

  MIT License

  •1•1•0•0•Updated Jan 2, 2025Jan 2, 2025

• roadmap

  Public
  cBioPortal Public Roadmap

  0•1•21•0•Updated Dec 30, 2024Dec 30, 2024

• cbioportal-helm

  Public
  Helm charts for cBioPortal Kubernetes Deployment

  1•0•1•0•Updated Nov 26, 2024Nov 26, 2024

• kc-user-importer

  Public
  Keycloak Legacy Light Client and user import scripts

  Python

  •0•0•0•0•Updated Nov 19, 2024Nov 19, 2024

• cbio-jupyter

  Public
  JavaScript

  •1•1•0•0•Updated Aug 23, 2024Aug 23, 2024

• clinical-data-dictionary

  Public
  Clinical Attribute Web Service for retrieving clinical attribute names and metadata.

  Java

  •8•5•4•3•Updated Aug 2, 2024Aug 2, 2024

• codebook

  Public
  A community shared resource of Python and R Notebooks that utilize the cBioPortal API for various analysis recipes

  Jupyter Notebook

  •14•9•2•0•Updated May 24, 2024May 24, 2024

• rfc80-team

  Public
  repository to hold issues for the rfc80 development / deployment team

  0•0•14•0•Updated May 8, 2024May 8, 2024

• maf

  Public
  Utility classes for the Mutation Annotation Format (MAF)

  Java

  •0•0•0•0•Updated Feb 7, 2024Feb 7, 2024

• cancerhotspots

  Public
  Cancer Hotspots

  JavaScript

  •

  GNU Affero General Public License v3.0

  •9•6•4•3•Updated Feb 7, 2024Feb 7, 2024

• MobxPromise

  Public
  Provides an observable interface for a computed promise.

  TypeScript

  •

  MIT License

  •5•3•0•1•Updated Jan 22, 2024Jan 22, 2024

• cache_warmer

  Public
  JavaScript

  •1•0•0•0•Updated Nov 28, 2023Nov 28, 2023

• cbioportal-clickhouse-pilot

  Public
  Python

  •4•0•0•0•Updated May 10, 2023May 10, 2023