Repositories list

• KG_QA

  Public
  Repository for the paper: "Natural Language Querying of Biodiversity Knowledge Graphs Using Function-Calling Language Models"

  0•0•0•0•Updated May 16, 2025May 16, 2025

• ontoportal_web_ui

  Public
  A Rails application for ontologies

  Ruby

  •

  Other

  •37•1•6•3•Updated May 13, 2025May 13, 2025

• ontoportal-ui-benchmarks

  Public
  Ruby

  •0•0•0•0•Updated Mar 28, 2025Mar 28, 2025

• ontologies_api

  Public
  Hypermedia API for OntoPortal ontology-related projects

  Ruby

  •

  Other

  •29•0•0•1•Updated Feb 21, 2025Feb 21, 2025

• ontology-access-kit

  Public
  Ontology Access Kit: A python library and command line application for working with ontologies

  Python

  •

  Apache License 2.0

  •30•0•0•4•Updated Feb 18, 2025Feb 18, 2025

• kgcl

  Public
  Datamodel for KGCL (Knowledge Graph Change Language)

  Python

  •

  MIT License

  •4•0•0•0•Updated Feb 17, 2025Feb 17, 2025

• ncbo_cron

  Public
  Jobs that run on a regular basis in the NCBO infrastructure

  Ruby

  •

  Other

  •19•0•1•0•Updated Feb 9, 2025Feb 9, 2025

• Historic_to_FAIR

  Public
  Historic to FAIR: Leveraging LLM for Historic Term Identification and Standardization

  0•0•0•0•Updated Dec 13, 2024Dec 13, 2024

• kgcl-rdflib

  Public
  Tools for working with KGCL

  Python

  •

  MIT License

  •9•0•0•0•Updated Nov 19, 2024Nov 19, 2024

• unknown_concepts_api

  Public
  API for identify, describe, and suggest an fitting ontology resource for unknown concepts in the field of biodiversity.

  Python

  •0•0•1•0•Updated Sep 13, 2024Sep 13, 2024

• bubastis

  Public
  Bubastis is an ontology diff tool

  JavaScript

  •

  Apache License 2.0

  •4•0•0•0•Updated Sep 11, 2024Sep 11, 2024

• ontologies_linked_data

  Public
  Models and serializers for ontologies and related artifacts backed by 4store

  Ruby

  •

  Other

  •23•0•0•0•Updated Aug 14, 2024Aug 14, 2024

• lookup_index

  Public
  Java

  •0•0•0•0•Updated Oct 11, 2023Oct 11, 2023

• website

  Public
  Source code for OntoPortal product and Alliance website

  HTML

  •

  MIT License

  •7•0•0•0•Updated Sep 29, 2023Sep 29, 2023

• .github

  Public
  0•0•0•0•Updated Aug 31, 2023Aug 31, 2023

• rdb2rdf

  Public
  A tool for transforming relational database dumps into OWL ontologies.

  Java

  •0•0•0•0•Updated Aug 7, 2023Aug 7, 2023

• owlapi_wrapper

  Public
  A command line utility that wraps the Java OWL-API to parse RDFS, OWL and OBO ontologies.

  Java

  •12•0•0•0•Updated May 24, 2023May 24, 2023

• ontoportal_web_ui_vscode

  Public
  Shared vscode ide settings for BiodivPortal/bioportal_web_ui.

  Ruby

  •0•0•0•0•Updated Mar 9, 2023Mar 9, 2023