Utrecht University

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329 repositories

PoC-scoping-review
Public
Scoping review of the methods to compute the "Probability of Causation (PoC)" or assigned share of an exposure as the cause of a multi-causal disease.
R
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MIT License
•0•0•0•0•Updated Aug 15, 2025Aug 15, 2025
campylobacter-crisprscape
Public
Exploring the diversity of CRISPR spacers in Campylobacter jejuni & coli
bioinformatics snakemake campylobacter crispr-cas-systems bacterial-genomics
Python
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BSD 3-Clause "New" or "Revised" License
•0•1•11•0•Updated Aug 15, 2025Aug 15, 2025
mimosa
Public
MIMOSA: Integrated Assessment Model for global cost-benefit analysis of climate policy
Python
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GNU General Public License v3.0
•6•7•0•1•Updated Aug 15, 2025Aug 15, 2025
yoda-ruleset
Public
iRODS ruleset and policies for Yoda: https://github.com/UtrechtUniversity/yoda
python yoda irods
Python
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GNU General Public License v3.0
•13•9•0•0•Updated Aug 15, 2025Aug 15, 2025
PoC-Asbestos
Public
Code and documentation for the calculation of a cut-off asbestos exposure value for the compensation of workers who develop lung cancer as a result of asbestos exposure, taking into account confounding and statistical uncertainties. The calculation uses the probability of causation (PoC) principle.
Rich Text Format
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MIT License
•0•0•0•0•Updated Aug 14, 2025Aug 14, 2025
msl_api
Public
PHP
•1•0•0•8•Updated Aug 14, 2025Aug 14, 2025
researchcloud-items
Public
Installation scripts for SURF ResearchCloud catalog components
ansible-role research-cloud
Jinja
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GNU General Public License v3.0
•4•7•28•2•Updated Aug 14, 2025Aug 14, 2025
yoda-clienttools
Public
Client-side Yoda tools - mainly intended for data managers and key users
yoda
Python
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GNU General Public License v3.0
•2•1•0•0•Updated Aug 14, 2025Aug 14, 2025
MEGAISurv-Namaste
Public
Nanopore Metagenomic Antibiotic Resistance and Taxonomy Screening
snakemake metagenomics antibiotic-resistance taxonomic-classification nanopore-sequencing
R
•
BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Aug 14, 2025Aug 14, 2025
yoda
Public
A system for reliable, long-term storing and archiving large amounts of research data during all stages of a study.
ansible data research yoda irods automated-deployment utrecht-university
HTML
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GNU General Public License v3.0
•24•51•53•1•Updated Aug 14, 2025Aug 14, 2025
vre-docs
Public
User documentation for Research Cloud tailored at UU researchers
Lua
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MIT License
•2•1•13•0•Updated Aug 13, 2025Aug 13, 2025
yoda-zabbix
Public
Zabbix files for Yoda: https://github.com/UtrechtUniversity/yoda
zabbix yoda zabbix-agentd
Shell
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GNU General Public License v3.0
•2•0•0•0•Updated Aug 13, 2025Aug 13, 2025
yoda-web-mock
Public
Mocks for web services that Yoda depends on.
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Aug 13, 2025Aug 13, 2025
yoda-external-user-service
Public
A service that provides for external user enrollment and external user management via a HTTP API for Yoda: https://github.com/UtrechtUniversity/yoda
python yoda
Python
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GNU General Public License v3.0
•1•1•0•0•Updated Aug 13, 2025Aug 13, 2025
yoda-moai
Public
Yoda OAI-PMH endpoint: https://github.com/UtrechtUniversity/yoda
oai-pmh
Python
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Other
•21•1•0•0•Updated Aug 13, 2025Aug 13, 2025
yoda-portal
Public
Web portal for Yoda: https://github.com/UtrechtUniversity/yoda
python flask yoda irods
JavaScript
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GNU General Public License v3.0
•13•10•0•1•Updated Aug 13, 2025Aug 13, 2025
yoda-performance-tests
Public
Yoda performance tests
Python
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GNU General Public License v3.0
•0•1•0•1•Updated Aug 12, 2025Aug 12, 2025
irods-rule-fuzzer
Public
An experimental fuzzer for iRODS rules
fuzzing irods
Python
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MIT License
•0•0•0•0•Updated Aug 12, 2025Aug 12, 2025
irods-consistency-check
Public
Check consistency between irods resource and on-disk vault.
checksum irods
Python
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GNU General Public License v3.0
•3•2•0•0•Updated Aug 12, 2025Aug 12, 2025
containerplatform-docs
Public
Container Platform public documentation
Dockerfile
•4•1•0•0•Updated Aug 6, 2025Aug 6, 2025
cd2-ansible
Public
Ansible scripts for the deployment of the CD² metadata catalogue
Jinja
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GNU Affero General Public License v3.0
•1•0•0•0•Updated Aug 5, 2025Aug 5, 2025
FSW-Openshift
Public
CSS
•0•0•0•5•Updated Aug 1, 2025Aug 1, 2025
UU-dissertation-template
Public template
This is a Utrecht University dissertation template for LaTeX
latex-template phd-thesis-template utrecht-university dissertation-template
TeX
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MIT License
•4•20•3•0•Updated Jul 31, 2025Jul 31, 2025
doy-data-inventory
Public
JavaScript
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Other
•0•0•0•0•Updated Jul 31, 2025Jul 31, 2025
FSW-orsee
Public
Online Recruitment System for Economic Experiments
PHP
•32•2•0•0•Updated Jul 31, 2025Jul 31, 2025
momentum-dataflow
Public
Repository for publishing website about data management practices of the Momentum project
data datamanagement datageneration
HTML
•0•0•0•0•Updated Jul 29, 2025Jul 29, 2025
dataprivacyproject
Public
This is the repository underlying the landing page for the Data Privacy Project @UtrechtUniversity, the Netherlands.
data privacy research open-science research-data-management rdm gdpr utrecht-university
SCSS
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MIT License
•2•2•0•0•Updated Jul 29, 2025Jul 29, 2025
MITAR
Public
Repository containing dynamical models for the MITAR project
R
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GNU General Public License v3.0
•0•1•0•0•Updated Jul 27, 2025Jul 27, 2025
BayesianEstimation
Public
Github page for the summerschool course "A gentle introduction to Bayesian Estimation"
HTML
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Creative Commons Attribution Share Alike 4.0 International
•4•2•0•0•Updated Jul 25, 2025Jul 25, 2025
ivt-pipeline-noresm-arctic_cordex
Public
Python
•0•0•0•0•Updated Jul 24, 2025Jul 24, 2025