ShawHahnLab

All

12 repositories

umbra
Public
Python package and executable for Linux for managing Illumina sequencing runs
bioinformatics sequencing illumina
Python
•
GNU Affero General Public License v3.0
•0•3•11•0•Updated Aug 7, 2025Aug 7, 2025
igseq
Public
IgSeq utilities
bioinformatics immunology
Python
•1•1•5•1•Updated Jun 12, 2025Jun 12, 2025
igseqhelper
Public
Antibody analysis umbrella package
snakemake immunology
Python
•0•0•0•0•Updated May 22, 2025May 22, 2025
partis
Public
B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
C++
•
GNU General Public License v3.0
•34•0•0•0•Updated Aug 20, 2024Aug 20, 2024
MINING-D
Public
A tool for de novo inference of D genes from immunosequencing data in diverse species
Python
•1•0•0•0•Updated Jul 25, 2024Jul 25, 2024
ARMADiLLO
Public
C++
•1•0•0•0•Updated Jul 18, 2024Jul 18, 2024
SONAR
Public
Software for Ontogenic aNalysis of Antibody Repertoires
Python
•
GNU General Public License v3.0
•9•0•0•0•Updated Apr 13, 2024Apr 13, 2024
chiimp
Public
Computational, High-throughput Individual Identification through Microsatellite Profiling
r-package tandem-repeats microsatellites short-tandem-repeats
R
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GNU Affero General Public License v3.0
•3•3•9•0•Updated Aug 9, 2023Aug 9, 2023
vquest
Public
Automate IMGT V-QUEST usage on imgt.org
bioinformatics immunology imgt
Python
•
GNU Affero General Public License v3.0
•3•14•2•0•Updated Oct 11, 2022Oct 11, 2022
chiimp-paper
Public
Supporting code for the microsatellite genotyping paper introducing CHIIMP
reproducible-research tandem-repeats microsatellites short-tandem-repeats
Makefile
•1•1•0•0•Updated Feb 1, 2021Feb 1, 2021
lassie
Public
Select sites and sequences from a serially sampled alignment
Python
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Other
•3•0•0•0•Updated Apr 10, 2019Apr 10, 2019
genbank-sub-20181109-dloop
Public
GenBank Submission 2018/11/09
genbank ncbi
Python
•0•1•0•0•Updated Nov 21, 2018Nov 21, 2018