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    34 repositories

    • streamlit-template

      Public
      Python
      •
      Other
      •34•16•32•15•Updated Sep 22, 2025Sep 22, 2025

    • OpenMS

      Public
      The codebase of the OpenMS project
      windowsmacoslinuxc-plus-plusalgorithmsmetabolomicshacktoberfest3-clause-bsdproteomicsmass-spectrometry
      C++
      •
      Other
      •360•526•640•58•Updated Sep 22, 2025Sep 22, 2025

    • streamlit-deployment

      Public
      Streamlit deployment with Docker
      9•1•0•4•Updated Sep 22, 2025Sep 22, 2025

    • FLASHApp

      Public
      Python
      •
      Other
      •0•0•0•1•Updated Sep 22, 2025Sep 22, 2025

    • pyopenms_viz

      Public
      Streamlining Mass Spectrometry Data Visualization with Pandas
      visualizationpandasmass-spectrometry
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •18•20•10•9•Updated Sep 9, 2025Sep 9, 2025

    • OpenMS-website

      Public
      Hugo sources for the OpenMS website
      HTML
      •
      Other
      •18•0•11•2•Updated Sep 9, 2025Sep 9, 2025

    • pyopenms-docs

      Public
      pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.
      openmsms-datahacktoberfesthacktoberfest2022python
      Python
      •
      Other
      •70•49•47•4•Updated Sep 2, 2025Sep 2, 2025

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •
      MIT License
      •3.6k•0•0•0•Updated Aug 28, 2025Aug 28, 2025

    • OpenMS-docs

      Public
      OpenMS Documentation.
      hacktoberfest
      CSS
      •
      BSD 3-Clause "New" or "Revised" License
      •27•2•56•9•Updated Aug 28, 2025Aug 28, 2025

    • autowrap

      Public
      Generates Python Extension modules from Cythons PXD files
      C++
      •
      Other
      •22•76•42•9•Updated Aug 13, 2025Aug 13, 2025

    • mz-calculator

      Public
      Python
      •
      Other
      •0•1•0•5•Updated Aug 12, 2025Aug 12, 2025

    • Assets

      Public
      Additional files (logos, splash screen, icons)
      2•0•4•0•Updated Jul 31, 2025Jul 31, 2025

    • dockerfiles

      Public archive
      This repository holds Dockerfiles for creating docker images for several OpenMS configurations based on different base images.
      Dockerfile
      •8•2•2•0•Updated Jun 2, 2025Jun 2, 2025

    • quantms-web

      Public
      0•0•0•0•Updated May 23, 2025May 23, 2025

    • OpenMS-Tutorials

      Public
      Tutorials as used in the user meetings. (Please assign a git tag for the revision used for the UM)
      hacktoberfest
      TeX
      •
      BSD 3-Clause "New" or "Revised" License
      •19•14•38•0•Updated May 20, 2025May 20, 2025

    • de.openms.knime

      Public
      Nodes etc. related to OpenMS
      Java
      •8•3•12•1•Updated May 20, 2025May 20, 2025

    • THIRDPARTY

      Public
      External binary dependencies (e.g. search engine binaries) packaged in installers
      12•2•1•1•Updated May 20, 2025May 20, 2025

    • contrib

      Public
      Automated CMake build scripts for the OpenMS contrib libraries
      CMake
      •
      Other
      •22•0•7•2•Updated May 20, 2025May 20, 2025

    • PTMScanner

      Public
      SagePTMScanner OpenMS WebApp
      Python
      •1•0•0•2•Updated Mar 11, 2025Mar 11, 2025

    • .github

      Public
      OpenMS organization public GitHub profile repository
      BSD 3-Clause "New" or "Revised" License
      •2•2•0•0•Updated Mar 4, 2025Mar 4, 2025

    • openms.github.io

      Public
      Code for our new webpage
      HTML
      •0•0•0•0•Updated Sep 3, 2024Sep 3, 2024

    • usage_plots

      Public
      Scripts for generating plots about the usage of OpenMS
      Python
      •4•2•0•0•Updated Jul 5, 2024Jul 5, 2024

    • contrib-sources

      Public
      Holds the packaged sources of chosen and tested versions of most of our needed contrib libraries.
      0•0•0•0•Updated Apr 29, 2024Apr 29, 2024

    • NSIS

      Public
      A ready-to-use NSIS with 8k strings support and ModernUI
      0•2•0•0•Updated Nov 9, 2023Nov 9, 2023

    • build-scripts

      Public
      Holds the scripts for setting up basic platform specific (but machine independent) environments to build OpenMS for different purposes.
      CMake
      •2•2•2•0•Updated Aug 15, 2023Aug 15, 2023

    • scientific-python-hugo-theme

      Public
      Hugo theme based on the design for numpy.org
      HTML
      •
      Other
      •27•0•0•0•Updated Apr 27, 2023Apr 27, 2023

    • cling-notebooks

      Public archive
      BSD 3-Clause "New" or "Revised" License
      •1•0•1•1•Updated Feb 25, 2023Feb 25, 2023

    • OpenMS-1

      Public archive
      The codebase of the OpenMS project
      C++
      •
      Other
      •360•0•0•0•Updated Feb 7, 2023Feb 7, 2023

    • PDCommunityNodes

      Public
      Community nodes for Thermo Proteome Discoverer
      C#
      •3•2•5•0•Updated Nov 29, 2022Nov 29, 2022

    • workflows

      Public archive
      KNIME workflows for use with OpenMS.
      4•2•0•0•Updated May 20, 2022May 20, 2022