Repositories list

• MotrpacBicQC

  Public
  R package for the MoTrPAC community

  proteomicsmetabolomicsqc+ 2motrpacr-package

  R

  •

  MIT License

  •4•8•13•0•Updated Jul 30, 2025Jul 30, 2025

• caper

  Public
  Cromwell/WDL wrapper for Python

  Python

  •

  MIT License

  •17•0•4•2•Updated Jul 27, 2025Jul 27, 2025

• motrpac-frontend

  Public
  User interface and Frontend for MoTrPAC Bioinformatics Center

  JavaScript

  •

  MIT License

  •0•3•46•4•Updated Jul 17, 2025Jul 17, 2025

• motrpac-rna-seq-pipeline

  Public
  WDL implementation of harmonized RNA-seq pipeline for MoTrPAC project

  Python

  •3•7•4•0•Updated Jun 27, 2025Jun 27, 2025

• motrpac-proteomics-pipeline

  Public
  MoTrPAC cloud-based proteomics data analysis pipeline

  Python

  •0•1•4•0•Updated Jun 23, 2025Jun 23, 2025

• MotrpacWorkshops

  Public
  Workshops about MoTrPAC data and tools

  HTML

  •

  MIT License

  •0•0•0•0•Updated May 20, 2025May 20, 2025

• .github

  Public
  0•0•0•0•Updated May 4, 2025May 4, 2025

• motrpac-cpet-ramp-protocol

  Public
  Code for MoTrPAC ramp protocol prediction paper

  machine-learningpredictioncardiopulmonary

  R

  •0•0•0•0•Updated Apr 18, 2025Apr 18, 2025

• motrpac-backend-utils

  Public
  Python package to unify utilities used by different backend services in the MoTrPAC Bioinformatics Center

  pythonutilitiesqueue+ 4multiprocessinggoogle-cloudzipfilebackend-service

  Python

  •

  Other

  •0•1•1•0•Updated Mar 16, 2025Mar 16, 2025

• MotrpacRatTraining6moData

  Public
  Data for analysis of the MoTrPAC endurance exercise training study in 6-month-old rats

  datamolecular-biologymulti-omics-data+ 1r

  R

  •

  MIT License

  •0•12•0•1•Updated Jan 30, 2025Jan 30, 2025

• motrpac-atac-seq-pipeline

  Public
  MoTrPAC implementation of the ENCODE ATAC-seq pipeline

  Shell

  •0•3•0•1•Updated Jan 28, 2025Jan 28, 2025

• MotrpacRatTraining6moQCRep

  Public
  Post-quantification analyses of multi-omic multi-tissue data from the MoTrPAC endurance exercise training study in young adult rats

  HTML

  •0•0•1•0•Updated Jan 10, 2025Jan 10, 2025

• MotrpacRatTraining6mo

  Public
  Analysis of the MoTrPAC endurance exercise training study in 6-month-old rats

  rdata-visualizationdata-analysis+ 1multi-omics

  R

  •

  MIT License

  •0•10•0•0•Updated Sep 30, 2024Sep 30, 2024

• exercise-transcriptome-meta-analysis

  Public
  A React frontend (for those who are interested in the transcriptomic changes in response to endurance and resistance exercise or training in human blood or skeletal muscle) to query the results from a meta-analysis of publicly available transcriptomes.

  JavaScript

  •0•0•6•0•Updated Sep 17, 2024Sep 17, 2024

• motrpac-rrbs-pipeline

  Public
  Pipeline for analysis of RRBS data, currently being based of MSSM pipeline

  WDL

  •0•2•1•1•Updated Aug 10, 2024Aug 10, 2024

• MotrpacRatTraining6moWATData

  Public
  Data and analysis results for the MoTrPAC PASS1B rat white adipose tissue manuscript

  datarexercise+ 6ratr-packageadipose-tissuemulti-omicsrattus-norvegicusmotrpac

  R

  •

  Other

  •0•1•0•0•Updated May 1, 2024May 1, 2024

• MotrpacRatTrainingPhysiologyData

  Public
  Data and analysis results for the MoTrPAC PASS1B rat physiology manuscript

  exerciseratphysiology+ 1motrpac

  R

  •

  Other

  •0•0•0•0•Updated May 1, 2024May 1, 2024

• motrpac_public_data_analysis

  Public
  trainingexercisegene+ 4moderatorsmeta-analysisgene-datacohort-data

  R

  •2•4•0•0•Updated Apr 2, 2024Apr 2, 2024

• MotrpacRatTraining6moWAT

  Public
  Helper Functions for the MotrpacRatTraining6moWATData R Package

  radipose-tissuemotrpac

  R

  •

  Other

  •0•2•1•0•Updated Mar 7, 2024Mar 7, 2024

• motrpac-rat-training-mitochondria

  Public
  MoTrPAC rat training mitochondria companion.

  HTML

  •0•1•0•0•Updated Sep 27, 2023Sep 27, 2023

• motrpac-proteomics-pnnl-prototype

  Public
  Testing implementation of PNNL pipeline on BIC infrastructure

  R

  •2•2•0•1•Updated Mar 29, 2023Mar 29, 2023

• clinical-sample-batching

  Public
  Batching script for clinical samples

  R

  •3•1•3•0•Updated Dec 14, 2022Dec 14, 2022

• motrpac-tools

  Public
  Scripts and Tools useful for MoTrPAC

  Python

  •

  MIT License

  •1•3•0•0•Updated Sep 15, 2022Sep 15, 2022

• motrpac.github.io

  Public
  HTML

  •0•1•0•0•Updated Jan 30, 2020Jan 30, 2020

• motrpac_candidate_starter

  Public
  A starter react application for programming exercise.

  JavaScript

  •

  MIT License

  •6•1•0•0•Updated Feb 1, 2019Feb 1, 2019

• ORIG_motrpac.github.io

  Public
  HTML

  •0•1•0•0•Updated Nov 1, 2018Nov 1, 2018

• motrpac_metaanalysis

  Public
  R

  •0•2•0•0•Updated Jun 14, 2018Jun 14, 2018