Repositories list

• DysonEqualizer

  Public
  Python

  •

  MIT License

  •0•0•1•0•Updated Jul 31, 2025Jul 31, 2025

• bipca

  Public
  Biwhitened PCA

  Jupyter Notebook

  •0•10•1•1•Updated Jul 4, 2025Jul 4, 2025

• SIMVI

  Public
  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •0•13•0•0•Updated Jun 27, 2025Jun 27, 2025

• LocalizedMarkerDetector

  Public
  R

  •

  Other

  •0•1•1•0•Updated Jun 13, 2025Jun 13, 2025

• Y-SCORCH_manuscript

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Apr 8, 2025Apr 8, 2025

• bipca-experiment

  Public
  Python

  •0•0•0•0•Updated Feb 2, 2025Feb 2, 2025

• GeneTrajectory-python

  Public
  Python implementation of Gene Trajectory

  Jupyter Notebook

  •

  MIT License

  •2•25•3•0•Updated Sep 4, 2024Sep 4, 2024

• GeneTrajectory

  Public
  R implementation of GeneTrajectory

  R

  •10•62•14•0•Updated Apr 5, 2024Apr 5, 2024

• GeneTrajectory-paper

  Public
  0•0•0•0•Updated Apr 5, 2024Apr 5, 2024

• ALRA

  Public
  Imputation method for scRNA-seq based on low-rank approximation

  dropoutimputationscrna-seq+ 2svdmatrix-completion

  R

  •

  MIT License

  •21•77•19•1•Updated Dec 14, 2023Dec 14, 2023

• SpectralNet

  Public
  Deep network that performs spectral clustering

  Python

  •

  MIT License

  •103•326•14•0•Updated Feb 23, 2023Feb 23, 2023

• GTF

  Public
  0•0•0•0•Updated Jan 19, 2023Jan 19, 2023

• GT

  Public
  R

  •0•0•0•0•Updated Dec 19, 2022Dec 19, 2022

• stg

  Public
  Python

  •

  MIT License

  •24•1•0•0•Updated Feb 18, 2022Feb 18, 2022

• ALRA-paper

  Public
  R

  •6•9•1•0•Updated Oct 31, 2021Oct 31, 2021

• FIt-SNE

  Public
  Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)

  visualizationbig-datat-sne+ 1fast-algorithm

  C++

  •

  Other

  •111•601•18•2•Updated Sep 13, 2021Sep 13, 2021

• pyFIt-SNE

  Public
  Python Wrapper for FIt-SNE

  C++

  •

  Other

  •11•45•1•1•Updated May 11, 2021May 11, 2021

• DAseq

  Public
  R

  •

  MIT License

  •5•41•12•0•Updated Apr 5, 2021Apr 5, 2021

• DAseq-paper

  Public
  R

  •1•3•0•0•Updated Mar 12, 2021Mar 12, 2021

• Scripts_Roulis_et_al_2020

  Public
  R

  •1•1•1•0•Updated May 26, 2020May 26, 2020

• batchEffectRemoval2020

  Public
  Python

  •0•1•0•0•Updated Apr 16, 2020Apr 16, 2020

• RotationScheduler

  Public
  R

  •1•0•0•0•Updated Apr 13, 2020Apr 13, 2020

• Pembro-Brain-Met-Trial-Nanostring

  Public
  0•0•0•0•Updated Aug 14, 2019Aug 14, 2019

• rpca-mkl

  Public
  Implementation of randomized PCA using Intel MKL

  pcarandomized-algorithmintel-mkl-library

  C++

  •0•2•3•0•Updated Jul 31, 2019Jul 31, 2019

• FIt-SNE-paper

  Public
  R

  •0•4•0•0•Updated Feb 11, 2019Feb 11, 2019

• t-SNE-Heatmaps

  Public
  Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq

  R

  •11•48•0•0•Updated Feb 7, 2019Feb 7, 2019

• IMC-Shoreline

  Public
  0•0•0•0•Updated Dec 1, 2018Dec 1, 2018

• Ritornello

  Public
  Ritornello is a high fidelity control free ChIP-seq peak calling algorithm

  C++

  •

  GNU General Public License v3.0

  •2•13•1•0•Updated Aug 23, 2018Aug 23, 2018

• BatchEffectRemoval

  Public
  Python

  •2•0•0•0•Updated May 11, 2018May 11, 2018

• adversarial-examples

  Public
  Code to reproduce results in the paper "Defending against Adversarial Images using Basis Functions Transformations"

  Python

  •6•5•2•0•Updated Apr 16, 2018Apr 16, 2018