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    19 repositories

    • Rade_Grieb_et_al_2023

      Public
      https://www.nature.com/articles/s43018-024-00763-8
      R
      •1•0•0•0•Updated Feb 14, 2025Feb 14, 2025

    • pan-NK

      Public
      These are scripts for pan-cacner NK cells analyses.
      R
      •13•0•0•0•Updated Aug 18, 2023Aug 18, 2023

    • human_embryo

      Public
      R
      •8•0•0•0•Updated Aug 9, 2023Aug 9, 2023

    • bulk2space

      Public
      a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell expression profiles
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •23•0•0•0•Updated Mar 22, 2023Mar 22, 2023

    • Asgard

      Public
      R
      •
      Other
      •21•0•0•0•Updated Feb 23, 2023Feb 23, 2023

    • Banksy

      Public
      BANKSY: spatial clustering
      R
      •
      Other
      •17•0•0•0•Updated Feb 20, 2023Feb 20, 2023

    • scRNA-PDAC-CC

      Public
      caner cell: Immune checkpoint HLA-E:CD94-NKG2A mediates evasion of circulating tumor cells from NK cell surveillance
      rscrna-seqcancer-cellpdac
      R
      •3•0•0•0•Updated Jan 26, 2023Jan 26, 2023

    • single-cell-papers-with-code

      Public
      Papers with code for single cell related papers
      71•0•0•0•Updated Jan 19, 2023Jan 19, 2023

    • Arc-well

      Public
      Archival single cell sequencing reveals persistent subclones over years to decades of DCIS progression
      R
      •1•0•0•0•Updated Dec 29, 2022Dec 29, 2022

    • sc-GC

      Public
      scRNA-seq of gastric tumor shows complex intercellular interaction with an alternative T cell exhaustion trajectory
      Python
      •
      MIT License
      •11•0•0•0•Updated Aug 24, 2022Aug 24, 2022

    • PDAC-Cancer-Cell

      Public
      R
      •1•0•0•0•Updated Jul 5, 2021Jul 5, 2021

    • Turati_NatCancer_2021

      Public
      R
      •1•0•0•0•Updated Apr 26, 2021Apr 26, 2021

    • BreastCancerSpatialProteomics

      Public
      Jupyter Notebook
      •5•0•0•0•Updated Feb 14, 2021Feb 14, 2021

    • ccRCC

      Public
      Single-Cell Analysis of Immune Cells from Renal Clear Cell Carcinoma
      PostScript
      •6•0•0•0•Updated Jan 17, 2021Jan 17, 2021

    • SAUCIE

      Public
      Python
      •29•0•0•0•Updated Dec 9, 2020Dec 9, 2020

    • PanMyeloid

      Public
      R
      •34•0•0•0•Updated Sep 16, 2020Sep 16, 2020

    • MPAL-Single-Cell-2019

      Public
      Publication Page for MPAL Paper 2019
      R
      •38•0•0•0•Updated Jun 25, 2020Jun 25, 2020

    • SCITO-seq_Manuscript

      Public
      SCITO-seq manuscript related
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Apr 24, 2020Apr 24, 2020

    • BISCUIT_SingleCell_IMM_ICML_2016

      Public
      R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
      R
      •32•0•0•0•Updated Mar 7, 2018Mar 7, 2018