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    62 repositories

    • IDC-WebApp

      Public
      Web Application front end for IDC (CORE REPO)
      core-repo
      JavaScript
      •
      Apache License 2.0
      •9•6•110•0•Updated May 29, 2025May 29, 2025

    • IDC-Common

      Public
      Shared code between repositories (CORE REPO)
      core-repo
      Python
      •
      Apache License 2.0
      •4•0•0•0•Updated May 29, 2025May 29, 2025

    • download

      Public
      Browser-based code for accessing IDC data resources
      HTML
      •
      Apache License 2.0
      •0•0•0•0•Updated May 28, 2025May 28, 2025

    • IDC-API

      Public
      Google Endpoints API providing programmatic access (CORE REPO)
      core-repo
      Python
      •
      Apache License 2.0
      •3•0•3•1•Updated May 28, 2025May 28, 2025

    • IDC-Docs

      Public
      Source for IDC documentation
      BSD 3-Clause "New" or "Revised" License
      •2•5•7•1•Updated May 28, 2025May 28, 2025

    • idc-slim

      Public
      Interoperable slide microscopy viewer for thin clients (CORE REPO)
      core-repoidc-viewers
      TypeScript
      •
      Apache License 2.0
      •0•0•4•1•Updated May 28, 2025May 28, 2025

    • etl_flow

      Public
      (CORE REPO)
      core-repo
      Python
      •
      Apache License 2.0
      •3•4•4•0•Updated May 28, 2025May 28, 2025

    • IDC-Tutorials

      Public
      Self-guided notebook tutorials to help get started with IDC
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •17•34•16•8•Updated May 27, 2025May 27, 2025

    • slim

      Public
      Interoperable web-based DICOM slide microscopy viewer and annotation tool
      reactoidcdicomwebdigital-pathologyidc-viewers
      TypeScript
      •
      Apache License 2.0
      •38•136•75•4•Updated May 26, 2025May 26, 2025

    • dicomweb-client

      Public
      Python client for DICOMweb RESTful services
      numpydicompython3pytestpython-requestsdicomwebpydicomtypehints
      Python
      •
      MIT License
      •40•121•10•4•Updated May 24, 2025May 24, 2025

    • highdicom

      Public
      High-level DICOM abstractions for the Python programming language
      numpydicompython3pydicomtypehints
      Python
      •
      MIT License
      •42•194•29•5•Updated May 20, 2025May 20, 2025

    • idc-index

      Public
      Python package to simplify access to the data available from NCI Imaging Data Commons
      Python
      •
      MIT License
      •7•15•23•0•Updated May 19, 2025May 19, 2025

    • idc-index-data

      Public
      Python package providing the index to query and download data hosted by the NCI Imaging Data Commons
      Python
      •
      MIT License
      •4•1•3•0•Updated May 19, 2025May 19, 2025

    • ThrottleProxy

      Public
      (CORE REPO)
      core-repo
      Python
      •
      Apache License 2.0
      •0•2•4•0•Updated May 19, 2025May 19, 2025

    • ViewersV3

      Public
      OHIF zero-footprint DICOM viewer tracking V3 (CORE REPO)
      core-repoidc-viewers
      TypeScript
      •
      MIT License
      •3.7k•0•1•0•Updated May 19, 2025May 19, 2025

    • conversion_mirax_dicom

      Public
      Code for the conversion of BMDeep dataset in MRXS format to DICOM format
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated May 13, 2025May 13, 2025

    • dicom-microscopy-viewer

      Public
      Web-based DICOM slide microscopy viewer library
      javascriptnpmdicomopenlayersdicomwebdicom-jsonidc-viewers
      JavaScript
      •
      MIT License
      •39•109•9•4•Updated May 7, 2025May 7, 2025

    • idc-wsi-conversion

      Public
      (CORE REPO)
      core-repo
      Shell
      •
      Other
      •0•13•1•0•Updated May 4, 2025May 4, 2025

    • idc-viewers-sandbox-gha-testing

      Public
      MIT License
      •1•1•0•0•Updated May 2, 2025May 2, 2025

    • s5cmd-python-distributions

      Public
      This project provides the infrastructure to build s5cmd Python wheels.
      Python
      •
      MIT License
      •1•5•1•0•Updated May 2, 2025May 2, 2025

    • Viewers

      Public
      OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages (CORE REPO)
      core-repoidc-viewers
      JavaScript
      •
      MIT License
      •3.7k•2•4•5•Updated Apr 29, 2025Apr 29, 2025

    • libdicom

      Public
      C library for reading DICOM files
      cdicommedical-imaging
      C
      •
      MIT License
      •10•23•2•0•Updated Apr 18, 2025Apr 18, 2025

    • idc-sm-annotations-conversion

      Public
      conversiondicompathomics
      Python
      •
      MIT License
      •1•0•0•0•Updated Apr 17, 2025Apr 17, 2025

    • CloudSegmentator

      Public
      Medical imaging segmentation workflows for FireCloud (Terra) and Seven Bridges Cancer Genomics Cloud
      Jupyter Notebook
      •
      Apache License 2.0
      •4•4•4•0•Updated Apr 14, 2025Apr 14, 2025

    • github_analytics

      Public
      Scripts for monitoring and archival of GitHub insights for IDC-related repositories
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Apr 2, 2025Apr 2, 2025

    • pyplastimatch

      Public
      Python wrapper for Plastimatch.
      pythondicom-imagesmedical-image-processing
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •6•17•2•1•Updated Apr 1, 2025Apr 1, 2025

    • ohif-gcp-extension

      Public
      TypeScript
      •
      MIT License
      •1•0•1•0•Updated Mar 11, 2025Mar 11, 2025

    • ohif-gcp-mode

      Public
      OHIF GCP Mode
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Mar 11, 2025Mar 11, 2025

    • IDC-Cron

      Public
      Cron jobs run for IDC monitoring (CORE REPO)
      core-repo
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 24, 2025Jan 24, 2025

    • .github

      Public
      MIT License
      •0•0•0•0•Updated Jan 13, 2025Jan 13, 2025