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    13 repositories

    • CanDI

      Public
      CanDI - A global cancer data integrator
      databasecancer-researchdepmap
      Jupyter Notebook
      •
      MIT License
      •4•6•6•0•Updated Aug 6, 2025Aug 6, 2025

    • omega

      Public
      OMEGA code described in "Scalable and cost-efficient custom gene library assembly from oligopools."
      Python
      •
      GNU General Public License v3.0
      •6•0•0•0•Updated Jul 21, 2025Jul 21, 2025

    • COMET_alignment

      Public
      my work on making a new pipeline to process COMET screen data
      Python
      •0•0•0•0•Updated May 14, 2025May 14, 2025

    • DDRi_RNAseq

      Public
      RNAseq analysis repository for analysis
      R
      •0•0•0•0•Updated Jan 31, 2025Jan 31, 2025

    • Decitabine-treatment

      Public
      A multiomics approach reveals RNA dynamics promote cellular sensitivity to DNA hypomethylation
      bioinformaticsdrug-discoverydna-methylationrna-modifications
      Jupyter Notebook
      •
      MIT License
      •1•1•0•0•Updated Jan 27, 2025Jan 27, 2025

    • DDRi-screens

      Public
      HTML
      •
      MIT License
      •1•1•0•0•Updated Jan 12, 2025Jan 12, 2025

    • gbm_perturb

      Public
      In vivo perturb-seq in GBM models
      Jupyter Notebook
      •
      Apache License 2.0
      •0•3•1•0•Updated Sep 3, 2024Sep 3, 2024

    • dCas9-fusions

      Public
      Python
      •0•0•0•0•Updated Apr 16, 2024Apr 16, 2024

    • server_wiki

      Public
      Guidelines and tips for server usage
      1•0•0•0•Updated Jan 5, 2024Jan 5, 2024

    • CRISPRi-dual-sgRNA-screens

      Public
      Python
      •
      MIT License
      •5•0•0•0•Updated Dec 11, 2023Dec 11, 2023

    • ScreenPro2

      Public archive
      [This is an archived repository, see the current version in Arc Institute GitHub]
      crispr-analysiscrisprcrispr-cas9
      Python
      •
      MIT License
      •1•1•0•0•Updated Dec 11, 2023Dec 11, 2023

    • dCas9-tiling

      Public
      Scripts for designing dCas9 tiling libraries
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 5, 2022Nov 5, 2022

    • QuantSeq-FWD-with-UMIs

      Public
      QuantSeq FWD with UMIs RNA-seq analysis pipeline
      R
      •
      MIT License
      •1•0•0•0•Updated Feb 17, 2022Feb 17, 2022