Repositories list

• cptools2

  Public
  Running cellprofiler on eddie3 / SGE clusters

  pythonbiologysge+ 3cellprofilerimaging-informaticshpc-cluster

  Python

  •5•5•15•2•Updated May 27, 2025May 27, 2025

• sc_morph_tracking

  Public
  The script for article "Single-cell morphological tracking of cell states to identify small-molecule modulators of liver differentiation".

  R

  •0•0•0•0•Updated Aug 16, 2024Aug 16, 2024

• phenonaut

  Public
  A tool for exploration of multiomic phenotypic space

  Python

  •

  Apache License 2.0

  •2•9•0•0•Updated Aug 5, 2024Aug 5, 2024

• install_cellprofiler

  Public
  Documentation and scripts to install CellProfiler on eddie3

  cellprofiler

  Shell

  •1•0•0•0•Updated Apr 28, 2022Apr 28, 2022

• meld

  Public
  Collect distributed cellprofiler results into sqlite databases.

  databasecellprofiler

  Python

  •1•0•4•0•Updated Nov 24, 2021Nov 24, 2021

• parserix

  Public
  parse metadata from ImageXpress paths

  laboratorymicroscopy

  Python

  •0•0•0•0•Updated May 10, 2021May 10, 2021

• scissorhands

  Public
  Generate eddie3 submission scripts in python

  sgecluster-computingpython

  Python

  •

  MIT License

  •0•0•0•0•Updated May 4, 2021May 4, 2021

• 2018-08_transfer_ML_between_cell_lines

  Public
  Python

  •1•3•1•0•Updated Nov 8, 2018Nov 8, 2018

• cpchecker

  Public
  Check for failed cellprofiler jobs on eddie3

  Python

  •0•0•0•0•Updated Oct 3, 2018Oct 3, 2018

• CellProfiler

  Public
  An open-source application for biological image analysis

  Python

  •

  Other

  •394•0•0•0•Updated Sep 24, 2018Sep 24, 2018

• ImageXpressR

  Public
  R package for extracting metadata from ImageXpress file paths

  R

  •

  Other

  •0•0•0•0•Updated Aug 3, 2017Aug 3, 2017