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    502 repositories

    • phylophoenix

      Public
      🔥🌿🐦🔥PhyloPHoeNIx: Pipeline for relatedness determination using PHoeNIx output.
      Python
      •
      Apache License 2.0
      •0•9•3•1•Updated Nov 2, 2025Nov 2, 2025

    • phoenix

      Public
      🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens
      Python
      •
      Apache License 2.0
      •33•87•12•0•Updated Nov 2, 2025Nov 2, 2025

    • stimulant_opioid_algorithm_medical_codes_R

      Public
      HTML
      •
      Apache License 2.0
      •3•4•0•0•Updated Nov 1, 2025Nov 1, 2025

    • eMKF

      Public
      SAS
      •
      Apache License 2.0
      •4•4•0•0•Updated Nov 1, 2025Nov 1, 2025

    • Opioid_SUD_MHI_MedCodes

      Public
      Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data
      Python
      •7•7•0•0•Updated Nov 1, 2025Nov 1, 2025

    • ixa

      Public
      Rust
      •
      Apache License 2.0
      •5•19•54•3•Updated Nov 1, 2025Nov 1, 2025

    • cdc-open-viz

      Public
      CDC OpenViz is a library of React packages for data visualization.
      reactvisualizationdatavisualization-library
      TypeScript
      •
      Apache License 2.0
      •30•46•0•4•Updated Nov 1, 2025Nov 1, 2025

    • prime-reportstream

      Public
      ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.
      fhirpublic-healthcivic-techhl7
      Kotlin
      •
      Creative Commons Zero v1.0 Universal
      •44•81•1.2k•148•Updated Nov 1, 2025Nov 1, 2025

    • cfa-dataops

      Public
      Python
      •
      Apache License 2.0
      •1•1•4•1•Updated Oct 31, 2025Oct 31, 2025

    • dibbs-ecr-viewer

      Public
      DIBBS eCR Viewer
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •1•12•107•16•Updated Oct 31, 2025Oct 31, 2025

    • cfa-cloudops

      Public
      Python
      •
      Apache License 2.0
      •1•2•4•4•Updated Oct 31, 2025Oct 31, 2025

    • dibbs-ecr-refiner

      Public
      The DIBBs eCR Refiner reduces eICR and RR files down to only the most useful, necessary information to alleviate performance and storage burden on eCR data pipelines and disease surveillance systems and bring focus to pertinent data for a given reportable condition.
      XSLT
      •
      Apache License 2.0
      •3•3•48•2•Updated Oct 31, 2025Oct 31, 2025

    • cfa-dagster

      Public
      Python
      •
      Apache License 2.0
      •0•0•1•0•Updated Oct 31, 2025Oct 31, 2025

    • zoe

      Public
      Zoe provides both broad and highly specialized implementations for bioinformatics. In particular, we focus on common data formats and methods relevant for the sequencing of RNA viruses.
      bioinformaticsncird-idcdc-influenza-division
      Rust
      •
      Apache License 2.0
      •2•7•0•0•Updated Oct 31, 2025Oct 31, 2025

    • prime-simplereport

      Public
      SimpleReport is a fast, free, and easy way for COVID-19 testing facilities to report results to public health departments.
      graphqlspring-bootreactjsterraform
      Java
      •
      Creative Commons Zero v1.0 Universal
      •63•61•186•25•Updated Oct 31, 2025Oct 31, 2025

    • dibbs-text-to-code

      Public
      Python
      •
      Apache License 2.0
      •0•0•36•5•Updated Oct 31, 2025Oct 31, 2025

    • oamd-bio-test-data

      Public
      Apache License 2.0
      •0•0•0•0•Updated Oct 31, 2025Oct 31, 2025

    • nccdphp-drh-mmria

      Public
      C#
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Oct 31, 2025Oct 31, 2025

    • cfa-epinow2-pipeline

      Public
      R
      •
      Apache License 2.0
      •6•12•43•6•Updated Oct 30, 2025Oct 30, 2025

    • dibbs-FHIR-Converter

      Public
      Conversion utility to translate legacy data formats into FHIR
      Liquid
      •
      MIT License
      •198•5•24•3•Updated Oct 30, 2025Oct 30, 2025

    • NEDSS-Infrastructure

      Public
      HCL
      •
      Apache License 2.0
      •6•4•0•1•Updated Oct 30, 2025Oct 30, 2025

    • pyrenew-hew

      Public
      Models and infrastructure for forecasting COVID-19 and Flu hospitalizations using wastewater data with PyRenew
      Python
      •
      Apache License 2.0
      •3•16•55•13•Updated Oct 29, 2025Oct 29, 2025

    • ixa-congregate-settings-measles

      Public
      Rust
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 29, 2025Oct 29, 2025

    • NEDSS-DataReporting

      Public
      Data Near Real Time Reporting micro services for Modernized NBS System
      TSQL
      •
      Apache License 2.0
      •5•2•0•6•Updated Oct 29, 2025Oct 29, 2025

    • ixa-epi-isolation

      Public
      Rust
      •
      Apache License 2.0
      •2•1•42•5•Updated Oct 29, 2025Oct 29, 2025

    • rsv-forecast-hub

      Public
      A repository run by the Centers for Disease Control and Prevention (CDC) to collect forecasts of incident respiratory syncytial virus (RSV) hospital admissions and emergency department visits.
      forecastinghubverserespiratory-syncytial-viruscenters-for-disease-control-and-preventioncenter-for-forecasting-and-outbreak-analytics
      Apache License 2.0
      •3•3•1•7•Updated Oct 29, 2025Oct 29, 2025

    • covid19-forecast-hub

      Public
      A repository run by the US CDC to collect forecasts of incident COVID-19 hospital admissions and emergency department visits.
      R
      •
      Apache License 2.0
      •26•19•18•12•Updated Oct 29, 2025Oct 29, 2025

    • dibbs-query-connector

      Public
      A FHIR client allowing public health agencies to query health care organizations directly or via a TEFCA QHIN
      nextjsfhirpublichealthfhir-clientdibbs
      PLpgSQL
      •
      Creative Commons Zero v1.0 Universal
      •6•13•67•13•Updated Oct 29, 2025Oct 29, 2025

    • scenarios-hpc-azure

      Public
      Python
      •
      Apache License 2.0
      •2•0•2•6•Updated Oct 28, 2025Oct 28, 2025

    • dibbs-vm

      Public
      Shell
      •
      Creative Commons Zero v1.0 Universal
      •4•1•26•5•Updated Oct 27, 2025Oct 27, 2025