Repositories list

• TCGAbiolinks

  Public
  TCGAbiolinks

  tcgabiocbioconductor+ 5gdcintegrative-analysistcgabiolinkstcga-datar

  R

  •119•328•265•2•Updated Jun 20, 2025Jun 20, 2025

• TCGAWorkflow

  Public
  TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages

  tcgabioconductortcgabiolinks

  TeX

  •20•46•9•1•Updated Jun 30, 2023Jun 30, 2023

• TCGAWorkflowData

  Public
  Example data to TCGAWorkflow

  androidtcgatcgabiolinks+ 2integrativebiocondcutor

  R

  •5•4•0•1•Updated Dec 29, 2022Dec 29, 2022

• TCGAbiolinksGUI.data

  Public
  Data package for TCGAbiolinksGUI

  R

  •0•1•0•0•Updated Mar 31, 2022Mar 31, 2022

• PanCanStem_Web

  Public
  HTML

  •

  GNU General Public License v3.0

  •16•32•5•0•Updated Dec 2, 2021Dec 2, 2021

• TCGAbiolinksGUI

  Public
  TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/

  guigdcintegrative+ 4rbioconductortcgabiolinkstcga-data

  R

  •14•36•33•0•Updated Aug 2, 2021Aug 2, 2021

• docker

  Public
  Build docker for TCGAbiolinksGUI, ELMER, TCGAbiolinks

  Dockerfile

  •0•1•0•0•Updated Jul 10, 2020Jul 10, 2020

• GeLB

  Public
  R script related to the manuscript "A serum-based DNA methylation assay provides accurate tumor detection and monitoring of glioma"

  R

  •0•0•0•0•Updated Jan 28, 2020Jan 28, 2020

• Bioc2017.TCGAbiolinks.ELMER

  Public
  Integrative analysis workshop with TCGAbiolinks and ELMER

  tcgadnabioconductor+ 4gdctcgabiolinksregulatory-networkbioc2017

  0•6•3•0•Updated Aug 2, 2017Aug 2, 2017

• TCGAbiolinksData

  Public
  TCGAbiolinks auxiliary data package

  R

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Apr 6, 2017Apr 6, 2017

• rols

  Public
  An R package to query EBI's Ontology Lookup Service (OLS)

  R

  •5•1•0•0•Updated Mar 4, 2016Mar 4, 2016

• labs

  Public
  Scripts for PH525x: Data Analysis for Genomics

  R

  •

  MIT License

  •2k•3•0•0•Updated May 4, 2014May 4, 2014