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    32 repositories

    • bfm-finetune

      Public
      Finetune routines for the Biodiveristy Foundation Model
      deep-learningmodellingfinetuningfoundation-models
      Jupyter Notebook
      •1•0•1•0•Updated Sep 23, 2025Sep 23, 2025

    • IASDT.R

      Public
      IASDT.R: Modelling the distribution of invasive alien plant species in Europe
      rspecies-distribution-modellinginvasive-specieseuropesdmshmscbiodtufz
      HTML
      •
      Other
      •0•1•0•0•Updated Sep 23, 2025Sep 23, 2025

    • uc-grassland

      Public
      pDT grassland main repository
      Python
      •
      European Union Public License 1.2
      •0•1•0•0•Updated Sep 22, 2025Sep 22, 2025

    • bfm-model

      Public
      Multi-modal Foundation Model for Biodiversity dynamics forecasting
      artificial-intelligencemodellingrepresentation-learningecologybiodiversitymulti-modalfoundation-models
      Python
      •
      Other
      •1•5•0•0•Updated Sep 18, 2025Sep 18, 2025

    • uc-grassland-model

      Public
      grassland simulation model source code
      C++
      •
      European Union Public License 1.2
      •0•2•0•0•Updated Sep 17, 2025Sep 17, 2025

    • biodt-shiny

      Public
      This repository contains a shiny application which is intended as the simplest way of interacting with BioDT by end-users.
      R
      •
      Other
      •3•8•19•1•Updated Sep 15, 2025Sep 15, 2025

    • bfm-data

      Public
      BioCube: A Multimodal Dataset for Biodiversity
      engineeringmachine-learningdatasetbiodiversitymultimodal
      Jupyter Notebook
      •
      Other
      •0•4•0•0•Updated Sep 10, 2025Sep 10, 2025

    • uc-forest-bird

      Public
      R
      •
      MIT License
      •2•1•0•0•Updated Sep 8, 2025Sep 8, 2025

    • general-soilgrids-soil-data

      Public
      Building block for obtaining selected soil data at given location from SoilGrids and derived data sources (Soilgrids REST API, HiHydroSoil map).
      Python
      •
      European Union Public License 1.2
      •2•2•0•0•Updated Aug 15, 2025Aug 15, 2025

    • general-copernicus-weather-data

      Public
      Building block for obtaining selected weather data at given location (0.1° x 0.1° spatial resolution) for desired time periods, at hourly resolution, e.g. from Copernicus ERA5-Land dataset
      Python
      •
      European Union Public License 1.2
      •0•1•0•0•Updated Aug 15, 2025Aug 15, 2025

    • uc-wildboar

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 3, 2025Jul 3, 2025

    • ces-recreation-reports

      Public
      Technical reports related to the Recreational Potential component of the Cultural Ecosystem Services project.
      TeX
      •0•0•3•0•Updated Jul 2, 2025Jul 2, 2025

    • uc-pollinators

      Public
      Honeybee pDT / pollinators UC main repository
      R
      •
      MIT License
      •0•2•0•0•Updated Jun 29, 2025Jun 29, 2025

    • uc-CWR

      Public
      The code base for the Crop-Wild-Relative (CWR) Biodiversity Digital Twin use-case led by UiO
      R
      •
      MIT License
      •4•2•7•2•Updated Jun 27, 2025Jun 27, 2025

    • uc-ces

      Public
      Modelling code for cultural ecosystem services pDT within BioDT
      R
      •
      MIT License
      •1•3•16•0•Updated Jun 25, 2025Jun 25, 2025

    • uc-ces-recreation

      Public
      Source code for the Recreational Potential Model for Scotland
      R
      •
      Other
      •0•0•18•1•Updated Jun 21, 2025Jun 21, 2025

    • biodt-fair

      Public
      Documentation, resources, and other materials related to FAIR and open science from the BioDT project.
      open-sciencefairbiodiversitydigital-twinro-crate
      Python
      •
      European Union Public License 1.2
      •2•4•0•0•Updated Jun 5, 2025Jun 5, 2025

    • gravity-wave-finetuning

      Public
      Finetuning Prithvi WxC - Climate Model Parameterization for Gravity Wave Flux
      Jupyter Notebook
      •
      MIT License
      •5•0•0•0•Updated May 21, 2025May 21, 2025

    • beehave-go-r

      Public
      R
      •
      Other
      •0•1•0•0•Updated Apr 28, 2025Apr 28, 2025

    • uc-ias-workflows

      Public
      Data and Model workflows for the Invasive Alien Species Digital Twin (IASDT)
      Jupyter Notebook
      •
      MIT License
      •1•1•0•0•Updated Apr 28, 2025Apr 28, 2025

    • Hackathon25

      Public
      BioDT School and Hackathon 2025
      Jupyter Notebook
      •
      MIT License
      •1•2•0•0•Updated Mar 21, 2025Mar 21, 2025

    • .github

      Public
      2•0•0•1•Updated Jan 28, 2025Jan 28, 2025

    • hmsc-container

      Public
      Dockerfile
      •
      MIT License
      •0•1•0•0•Updated Aug 14, 2024Aug 14, 2024

    • calibration_bb

      Public
      This repo contains scripts fro the calibration/hyperparameter search building block.
      Python
      •
      MIT License
      •0•1•0•0•Updated Aug 12, 2024Aug 12, 2024

    • pydidit

      Public
      Python
      •0•0•9•0•Updated Jul 30, 2024Jul 30, 2024

    • uc-pollinators-container

      Public
      Dockerfile
      •
      MIT License
      •0•1•0•0•Updated Mar 21, 2024Mar 21, 2024

    • uc-pollinators-beehave

      Public
      NetLogo
      •
      Other
      •0•0•0•0•Updated Mar 11, 2024Mar 11, 2024

    • iasdt

      Public
      Invasive Alien Species Digital Twin (IASDT) -- User Documentation
      0•0•0•0•Updated Dec 18, 2023Dec 18, 2023

    • biodt-pandoc

      Public
      Pandoc template for BioDT HTML slides
      HTML
      •
      Other
      •1•0•0•0•Updated Dec 5, 2023Dec 5, 2023

    • uc-ces-qr-code-redirector

      Public
      A gh-pages hosted webpage that we can link to and will redirect to wherever we need it to
      HTML
      •0•0•0•0•Updated Nov 10, 2023Nov 10, 2023