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    99 repositories

    • aai-backend

      Public
      The backend library between Auth0 and the AAI portal front end.
      Python
      •0•0•0•1•Updated Aug 8, 2025Aug 8, 2025

    • sarek

      Public
      Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
      Nextflow
      •
      MIT License
      •464•0•0•0•Updated Aug 7, 2025Aug 7, 2025

    • ables

      Public
      Australian BioCommons Leadership Share (ABLeS) documentation
      HTML
      •11•1•2•0•Updated Aug 7, 2025Aug 7, 2025

    • aai-portal

      Public
      TypeScript
      •0•0•0•0•Updated Aug 6, 2025Aug 6, 2025

    • gen3_validator

      Public
      Performs validation of json objects to a gen3 jsonschema. Also provides tools to validate metadata linkage between data nodes.
      Python
      •
      Apache License 2.0
      •0•0•3•0•Updated Aug 5, 2025Aug 5, 2025

    • gen3schemadev

      Public
      Gen3 Schema Development tools
      gen3
      Python
      •
      Apache License 2.0
      •1•1•1•0•Updated Aug 5, 2025Aug 5, 2025

    • acdc-schema-json

      Public
      Contains the jsonschema for the Australian Cardiovascular Disease Project
      0•1•0•0•Updated Aug 5, 2025Aug 5, 2025

    • omix3-commons-frontend-app

      Public template
      Gen3 Data Commons template repository for gen3 frontend framework
      TypeScript
      •
      Apache License 2.0
      •23•1•0•0•Updated Aug 5, 2025Aug 5, 2025

    • rems-aws-cdk

      Public
      REMS Deployment with AWS CDK
      TypeScript
      •0•1•0•0•Updated Aug 4, 2025Aug 4, 2025

    • rems

      Public
      Resource Entitlement Management System is a tool for managing access rights to resources, such as research datasets.
      Clojure
      •
      MIT License
      •25•0•0•0•Updated Aug 4, 2025Aug 4, 2025

    • gen3-helm

      Public
      Helm charts for Gen3 Deployments
      Smarty
      •
      Apache License 2.0
      •29•0•0•0•Updated Aug 4, 2025Aug 4, 2025

    • acdc-datapipeline-demo

      Public
      Monorepo to test data pipeline for the ACDC project. Techstack includes: dbt, glue, lambda, and step functions
      Jupyter Notebook
      •
      Apache License 2.0
      •0•1•0•0•Updated Jul 30, 2025Jul 30, 2025

    • gen3-eks-pipeline

      Public
      TypeScript
      •1•0•0•0•Updated Jul 28, 2025Jul 28, 2025

    • toolfinder

      Public
      Website for the Australian BioCommons ToolFinder
      HTML
      •
      MIT License
      •5•1•0•0•Updated Jul 28, 2025Jul 28, 2025

    • australianbiocommons.github.io

      Public
      Australian BioCommons ToolFinder and WorkflowFinder: contains tool and workflow install status
      infrastructuretoolsworkflows
      Python
      •
      Apache License 2.0
      •2•6•0•0•Updated Jul 25, 2025Jul 25, 2025

    • ACDC_login

      Public
      Documents for ACDC login flow
      1•0•0•0•Updated Jul 21, 2025Jul 21, 2025

    • gen3-metadata-templates

      Public
      Tool to create metadata submission templates from a gen3 json schema.
      Shell
      •
      Apache License 2.0
      •0•0•0•0•Updated Jul 18, 2025Jul 18, 2025

    • galaxy

      Public
      Data intensive science for everyone.
      Python
      •
      Other
      •1.1k•0•0•1•Updated Jul 16, 2025Jul 16, 2025

    • gen3-metadata

      Public
      User friendly tools for downloading and manipulating gen3 metadata
      Python
      •
      Apache License 2.0
      •1•1•1•0•Updated Jul 11, 2025Jul 11, 2025

    • how-to-workflowhub-space

      Public
      HTML
      •
      MIT License
      •0•1•0•0•Updated Jul 11, 2025Jul 11, 2025

    • acdc-tools

      Public
      Library of tools to facilitate gen3 data operations for the Australian Cardiovascular Disease Commons project
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jul 2, 2025Jul 2, 2025

    • omix3-squid-aws-proxy

      Public
      TypeScript
      •1•0•0•0•Updated Jul 1, 2025Jul 1, 2025

    • fence

      Public
      AuthN/AuthZ OIDC Service
      Python
      •
      Apache License 2.0
      •47•1•0•0•Updated Jun 30, 2025Jun 30, 2025

    • ACDC_authz

      Public
      Design documents for ACDC dataset authorization mechanism
      1•0•0•0•Updated Jun 30, 2025Jun 30, 2025

    • squid-aws-proxy

      Public
      TypeScript
      •1•0•0•0•Updated Jun 25, 2025Jun 25, 2025

    • proteinfold

      Public
      Protein 3D structure prediction pipeline
      Nextflow
      •
      MIT License
      •58•2•0•1•Updated Jun 18, 2025Jun 18, 2025

    • human-omics-data-sharing-field-guide

      Public
      Prototype for Human Genomics Data Sharing Field Guide Website
      genomicshumanstandardsga4ghdata-sharing
      TeX
      •
      MIT License
      •4•2•1•0•Updated May 30, 2025May 30, 2025

    • Community-Library

      Public
      SCSS
      •
      MIT License
      •2•2•2•0•Updated May 20, 2025May 20, 2025

    • how-to-hub

      Public
      This central hub links to step-by-step How-to Guides, and associated documents, that support the reuse of bioinformatics tools, workflows and data on Australian compute systems and digital research infrastructure.
      HTML
      •
      MIT License
      •5•2•0•0•Updated May 8, 2025May 8, 2025

    • atol-data-broker

      Public
      GNU General Public License v3.0
      •0•0•0•0•Updated May 2, 2025May 2, 2025