Merge pull request #43 from fredboudon/master

Upgrade to new namespace convention. Add py 3.11 and py3.12

Author: pradal

.github/workflows/conda-package-build.yml

@@ -1,105 +1,21 @@
-name: Building Package using Conda
+name: Building Package
 
 on:
   push:
-    branches: [ master ]
+    branches: 
+      - '**'
+    tags:
+      - 'v*'
   pull_request:
-    branches: [ master ]
+    branches: 
+      - '**'
 
 
 jobs:
   build:
-    runs-on: ${{ matrix.os }}
-    strategy:
-      #max-parallel: 5
-      matrix:
-        os: [ macos-latest, ubuntu-latest]
-        env:
-          - CONDA_PY: "37"
-            CONDA_NPY: "111" 
-          - CONDA_PY: "38" 
-            CONDA_NPY: "116"
-          - CONDA_PY: "39" 
-            CONDA_NPY: "119"
-
-    environment: anaconda_build
-
-    steps:
-    - uses: actions/checkout@v2
-
-    - name: Add conda to system path
-      run: |
-        # Add conda to system path
-        # $CONDA is an environment variable pointing to the root of the miniconda directory
-        echo $CONDA/bin >> $GITHUB_PATH
-
-    - name: Setup conda
-      run: |
-        # Setup conda
-        sudo conda config --add channels conda-forge
-        sudo conda config --add channels openalea3
-        sudo conda config --set always_yes yes
-        sudo conda config --set remote_read_timeout_secs 600
-        sudo conda config --set auto_update_conda False
-        sudo conda install conda-build anaconda-client
-
-    - name: Build 
-      env:
-          CONDA_PY: ${{ matrix.env.CONDA_PY }}
-          CONDA_NPY: ${{ matrix.env.CONDA_NPY }}
-      run: |
-        # Build
-        if [[ "$CONDA_PY" = "" ]]; then
-          echo "CONDA_PY is not defined"
-          exit -1
-        fi
-        if [[ "$CONDA_NPY" = "" ]]; then
-          echo "CONDA_NPY is not defined"
-          exit -1
-        fi
-        export PYTHON_VERSION=${CONDA_PY:0:1}.${CONDA_PY:1:1}
-        export NUMPY_VERSION=${CONDA_NPY:0:1}.${CONDA_NPY:1:2}
-
-        export BUILD_CMD="sudo conda build . --python=$PYTHON_VERSION"
-        export BUILD_OUTPUT=`$BUILD_CMD --output`
-
-        if [[ "$BUILD_OUTPUT" = "" ]]; then
-          echo "PACKAGE NAME is not defined"
-          exit -1
-        fi
-        echo "BUILD_OUTPUT=$BUILD_OUTPUT" >> $GITHUB_ENV
-
-        $BUILD_CMD
-
-
-    - name: Login
-      env:
-          ANACONDA_LOGIN: ${{ secrets.ANACONDA_LOGIN }}
-          ANACONDA_PASSWORD: ${{ secrets.ANACONDA_PASSWORD }}
-      run: |
-        # Login
-        if [[ "$ANACONDA_LOGIN" = "" ]]; then
-          echo "ANACONDA_LOGIN is not defined"
-          exit -1
-        fi
-        SESSION_UID=$(uuidgen)
-        anaconda login --username $ANACONDA_LOGIN --password $ANACONDA_PASSWORD --hostname $SESSION_UID
-
-    - name: Deploy
-      env:
-          ANACONDA_OWNER: ${{ secrets.ANACONDA_OWNER }}
-          BUILD_OUTPUT: ${{ env.BUILD_OUTPUT }}
-      run: |
-        # Deploy
-        if [[ "$ANACONDA_OWNER" = "" ]]; then
-          echo "ANACONDA_OWNER is not defined"
-          exit -1
-        fi
-
-        echo "PACKAGE NAME:" $BUILD_OUTPUT
-        if [[ "$BUILD_OUTPUT" = "" ]]; then
-          echo "PACKAGE NAME is not defined"
-          exit -1
-        fi
-        anaconda upload --skip-existing $BUILD_OUTPUT -u $ANACONDA_OWNER --no-progress
-
+    uses: openalea/github-action-conda-build/.github/workflows/conda-package-build.yml@main
+    with:
+      conda-channels: openalea3, conda-forge
+    secrets: 
+      anaconda_token: ${{ secrets.ANACONDA_TOKEN }}
+      

.gitignore

@@ -14,13 +14,12 @@ src/openalea/lpy/gui/logindialog.py
 src/openalea/lpy/gui/lpymainwindow.py
 src/openalea/lpy/gui/lpyprefwidget.py
 src/openalea/lpy/gui/py2exe_release.py
-#src/openalea/lpy/gui/lpyresources_rc.py
+src/openalea/lpy/gui/lpyresources_rc.py
 src/openalea/lpy/gui/scalarfloatmetaedit.py
 src/openalea/lpy/gui/scalarmetaedit.py
 
 # lpy temp file
-*.lpy~
-*.py~
+*.*~
 \#*\#
 
 # C extensions

CMakeLists.txt

@@ -11,6 +11,8 @@ project(lpy_project CXX)
 
 # --- Build setup
 
+set(CMAKE_INCLUDE_PATH "$ENV{CONDA_PREFIX}/include" ${CMAKE_INCLUDE_PATH})
+set(CMAKE_LIBRARY_PATH "$ENV{CONDA_PREFIX}/lib" ${CMAKE_LIBRARY_PATH})
 set(CMAKE_SKIP_BUILD_RPATH FALSE)
 set(CMAKE_BUILD_WITH_INSTALL_RPATH FALSE)
 set(CMAKE_INSTALL_RPATH "${CMAKE_INSTALL_PREFIX}/lib")
@@ -35,6 +37,9 @@ set(CMAKE_CXX_FLAGS_RELEASE "-O2 -DNDEBUG")
 
 if (MSVC)
     set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} /MP")
+
+    # To fix compilation error with vc14 and boost
+    set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} /DHAVE_SNPRINTF")
 endif()
 
 ## When linking, Python libs are required, so I advised I could use: "target_library_link(targetname ${Python3_LIBRARIES})"
@@ -51,25 +56,34 @@ endif()
 
 # --- Python
 
-find_package (Python3 COMPONENTS Interpreter Development REQUIRED)
+set(Python3_FIND_VIRTUALENV FIRST)
+if (WIN32)
+  # needed when we run cmake in a conda environment
+  set(Python3_FIND_REGISTRY LAST)
+endif()
+
+find_package (Python3 COMPONENTS Interpreter Development NumPy REQUIRED)
 include_directories(${Python3_INCLUDE_DIRS})
 
 # --- Libraries
 
 find_package(Threads REQUIRED)
-find_package(Qt5Core CONFIG REQUIRED)
-find_package(Qt5Concurrent CONFIG REQUIRED)
+find_package(QT NAMES Qt6 Qt5 REQUIRED COMPONENTS Core)
+find_package(Qt${QT_VERSION_MAJOR} REQUIRED COMPONENTS Core Concurrent)
 find_package(PlantGL REQUIRED)
 
 set(Boost_NO_SYSTEM_PATHS ON)
 set(Boost_USE_MULTITHREAD ON)
 set(Boost_USE_STATIC_LIBS OFF)
 set(BUILD_SHARED_LIBS ON)
 
-if (USE_CONDA)
+
+set(boost_python python${Python3_VERSION_MAJOR}${Python3_VERSION_MINOR})
+find_package(Boost 1.69 COMPONENTS system ${boost_python} REQUIRED)
+if (NOT Boost_FOUND)
+    message("Boost not found, trying again")
     set(boost_python python)
-else()
-    set(boost_python python${Python3_VERSION_MAJOR}${Python3_VERSION_MINOR})
+    find_package(Boost 1.69 COMPONENTS system ${boost_python} REQUIRED)
 endif()
 
 find_package(Boost COMPONENTS system ${boost_python} REQUIRED)

appveyor.yml

@@ -6,11 +6,12 @@ environment:
   CONDA_VERSION: 3
 
   matrix:
-    - CONDA_PY: 37
     - CONDA_PY: 38 
       CONDA_NPY: 116
     - CONDA_PY: 39 
       CONDA_NPY: 119
+    - CONDA_PY: 310 
+      CONDA_NPY: 121
 
 install:
   - git clone https://github.com/OpenAlea/appveyor-ci.git appveyor-ci

build.sh

@@ -1 +1 @@
-conda build . -c conda-forge -c fredboudon -c defaults  --python=3.7
+conda mambabuild . -c conda-forge -c fredboudon  --python=3.10 --no-test

conda/build.sh

@@ -58,7 +58,7 @@ echo "PYTHON:" ${PYTHON}
 #export PYTHONPATH=${PREFIX}/lib/python${PY_VER}/site-packages/
 ${PYTHON} setup.py install --prefix=${PREFIX} 
 
-cp -r share `${PYTHON} -c "import os, openalea.lpy as lpy ; print(os.path.dirname(lpy.__file__))"`/..
+#cp -r share `${PYTHON} -c "import os, openalea.lpy as lpy ; print(os.path.dirname(lpy.__file__))"`/..
 
 echo
 echo "****** CHECK PYTHON LIB"
@@ -71,6 +71,6 @@ else
     export LDD='ldd'    
 fi
 
-${LDD} `${PYTHON} -c "import openalea.lpy.__lpy_kernel__ as lpy ; print(lpy.__file__)"`
+echo `${PYTHON} -c "import openalea.lpy.__lpy_kernel__ as lpy ; print(lpy.__file__)"`
 
 echo "****** END OF BUILD PROCESS"

conda/conda_build_config.yaml

@@ -0,0 +1,17 @@
+cxx_compiler:
+  - gxx                        # [linux]
+  - clangxx                    # [osx]
+  - vs2019                     # [win]
+compiler_version:
+  - 11                         # [osx]
+  - 11.2.0                     # [linux]
+cxx_compiler_version:
+  - 11                         # [osx]
+  - 11.2.0                     # [linux]
+MACOSX_DEPLOYMENT_TARGET:  # [osx]
+  - '10.12'                # [osx]
+MACOSX_SDK_VERSION:        # [osx and x86_64]
+  - '10.12'                # [osx and x86_64]
+pin_run_as_build:
+  boost: x.x
+  openalea.plantgl: x.x

conda/meta.yaml

@@ -15,33 +15,33 @@ about:
 
 build:
   preserve_egg_dir: True
-  number: 0
+  number: 1
 requirements:
+  host:
+    - python x.x
+    - setuptools
+    - openalea.plantgl >=3.17
+    - boost
+    - pyqt
   build:
-    - binutils_impl_linux-64<2.31.0 # [linux]
+    - binutils_impl_linux-64           # [linux]
     - {{ compiler('cxx') }}
-    - python {{PY_VER}}
-    - cmake >=3.12.0
+    - python x.x
+    - cmake 
     - pkg-config                        # [linux]
     - make                              # [unix]
     - menuinst                          # [win]
-  host:
-    - python {{PY_VER}}
-    - setuptools
-    - openalea.plantgl
-    # - boost # provided by plantgl
-    - pyqt
   run:
-    - python {{PY_VER}}
+    - python x.x
     - setuptools
     - {{ pin_compatible('openalea.plantgl', max_pin='x.x') }} 
-    - {{ pin_compatible('boost',            max_pin='x.x.x') }} 
+    - boost
     - pyqt
     - ipython
     - qtconsole
     - jupyter_client # <6
     - pyopengl
-    - pyqglviewer
+    - pyqglviewer >=1.3
     - jsonschema
 
 app:
@@ -52,11 +52,12 @@ app:
 test:
   requires:
     - nose
+    - pandas
   imports:
     - openalea.lpy
   source_files:
     - test/
     - share/
   commands:
-    - nosetests -v -I test_predecessor_at_scale.py -I test_ui.py [unix]
-    - nosetests -v -I test_predecessor_at_scale.py -I test_ui.py -I test_axialtree.py -I test_successor_at_scale.py [win]
+    - nosetests -v -I test_predecessor_at_scale.py -I test_ui.py -I test_pickle.py [unix]
+    - nosetests -v -I test_predecessor_at_scale.py -I test_ui.py -I test_axialtree.py -I test_successor_at_scale.py -I test_pickle.py [win]