Update for onecodex v0.2.4; use docker-scipy-notebook v0.1.4

Author: boydgreenfield

Dockerfile

@@ -1,4 +1,4 @@
-FROM quay.io/refgenomics/docker-scipy-notebook:v0.1.3
+FROM quay.io/refgenomics/docker-scipy-notebook:v0.1.4
 MAINTAINER Nick <nick@onecodex.com>
 
 # Add jessie-backports repository, install bwa 0.7.13 and samtools 1.3.1
@@ -26,10 +26,10 @@ RUN pip install jupyter_contrib_nbextensions && \
     jupyter nbextension enable python-markdown/main
 
 # Install Python dependencies (Python 3 only)
-RUN pip install --no-cache awscli==1.10.58 biopython==1.68 seaborn==0.7.1 scikit-bio==0.5.1
+RUN pip install --no-cache awscli==1.10.58
 
 # Install One Codex Python lib
-RUN pip install --no-cache onecodex==0.2.3
+RUN pip install --no-cache onecodex[all]==0.2.4
 
 # Run as unprivileged user 1000
 USER 1000