Consider setting 'minSize' to a value > 1?

[gjones3339]

Hi I have tried to look through all of the tutorials for immunedeconv (and Xcell) and I cannot find anywhere that I am able to set the "minSize" parameter (for deconvolute nor deconvolute_xcell, nor the xcellAnalysis functions). I have bulk RNAseq from whole blood human datasetes, so most of the celltypes for xcell I would anticipate being there. I removed the immune/microenvironment scores just to check, and still get the same problem on both datasets.

> kmoa_results <- deconvolute_xcell(
+   KMOA_TPMs,
+   expected_cell_types = cell_types,
+   arrays = FALSE  #TRUE only if microarray data
+ )

>>> Running xcell
Warning: Some gene sets have size one. Consider setting 'minSize' to a value > 1.

Does anyone have any suggestions for what I can do to address this?