Merge pull request #145 from omnideconv/pre-commit-ci-update-config

[pre-commit.ci] pre-commit autoupdate

Author: grst

.github/workflows/conda.yml

@@ -26,14 +26,15 @@ jobs:
         uses: conda-incubator/setup-miniconda@v2
         with:
           auto-update-conda: true
-          mamba-version: "*"
-          channels: conda-forge,bioconda,defaults
+          miniforge-version: latest
+          use-mamba: true
+          channels: conda-forge,bioconda
           channel-priority: true
           python-version: 3.8
 
       - name: Set-up channels and install conda build
         run: |
-          mamba install -y conda-build conda-verify
+          mamba install -y conda-build conda-verify boa
         shell: bash
 
       - name: build and test package

.pre-commit-config.yaml

@@ -2,7 +2,7 @@
 # R specific hooks: https://github.com/lorenzwalthert/precommit
 repos:
   - repo: https://github.com/lorenzwalthert/precommit
-    rev: v0.3.2.9007
+    rev: v0.3.2.9021
     hooks:
       - id: style-files
         args: [--style_pkg=styler, --style_fun=tidyverse_style]
@@ -17,7 +17,7 @@ repos:
       - id: end-of-file-fixer
         exclude: '\.Rd'
   - repo: https://github.com/pre-commit-ci/pre-commit-ci-config
-    rev: v1.5.1
+    rev: v1.6.1
     hooks:
       # Only reuiqred when https://pre-commit.ci is used for config validation
       - id: check-pre-commit-ci-config
@@ -31,7 +31,7 @@ repos:
         exclude: "inst/extdata/.*"
         # `exclude: <regex>` to allow committing specific files
   - repo: https://github.com/pre-commit/mirrors-prettier
-    rev: v3.0.0-alpha.6
+    rev: v3.0.3
     hooks:
       - id: prettier
 

tests/testthat/test_mapping.R

@@ -1,4 +1,3 @@
-
 test_that("cell_type mapping to a single method_cell_type are calculated correctly", {
   fractions <- data.frame(sample1 = c("B cell" = .3, "T cell CD4+" = .5, "Myeloid dendritic cell" = .2))
   cell_type <- "T cell CD4+"