From 752107d80c628f13447a6616c862ba3b80e09d5e Mon Sep 17 00:00:00 2001 From: nf-core-bot Date: Sat, 25 Oct 2025 00:27:19 +0000 Subject: [PATCH] [automated] Update pipeline configs --- pipeline/abotyper.config | 12 ++++++++++++ pipeline/alleleexpression.config | 12 ++++++++++++ pipeline/cellpainting.config | 12 ++++++++++++ pipeline/diseasemodulediscovery.config | 12 ++++++++++++ pipeline/longraredisease.config | 12 ++++++++++++ pipeline/lsmquant.config | 12 ++++++++++++ pipeline/panoramaseq.config | 12 ++++++++++++ pipeline/proteinannotator.config | 12 ++++++++++++ pipeline/rarevariantburden.config | 12 ++++++++++++ pipeline/ribomsqc.config | 12 ++++++++++++ pipeline/seqsubmit.config | 12 ++++++++++++ pipeline/sopa.config | 12 ++++++++++++ pipeline/variantprioritization.config | 12 ++++++++++++ pipeline/viralmetagenome.config | 12 ++++++++++++ 14 files changed, 168 insertions(+) create mode 100644 pipeline/abotyper.config create mode 100644 pipeline/alleleexpression.config create mode 100644 pipeline/cellpainting.config create mode 100644 pipeline/diseasemodulediscovery.config create mode 100644 pipeline/longraredisease.config create mode 100644 pipeline/lsmquant.config create mode 100644 pipeline/panoramaseq.config create mode 100644 pipeline/proteinannotator.config create mode 100644 pipeline/rarevariantburden.config create mode 100644 pipeline/ribomsqc.config create mode 100644 pipeline/seqsubmit.config create mode 100644 pipeline/sopa.config create mode 100644 pipeline/variantprioritization.config create mode 100644 pipeline/viralmetagenome.config diff --git a/pipeline/abotyper.config b/pipeline/abotyper.config new file mode 100644 index 000000000..2b37626e1 --- /dev/null +++ b/pipeline/abotyper.config @@ -0,0 +1,12 @@ +/* +* ------------------------------------------------- +* nfcore/abotyper custom profile Nextflow config file +* ------------------------------------------------- +* Config options for custom environments. +* Cluster-specific config options should be saved +* in the conf/pipeline/abotyper folder and imported +* under a profile name here. +*/ + +profiles { +} diff --git a/pipeline/alleleexpression.config b/pipeline/alleleexpression.config new file mode 100644 index 000000000..299f60c46 --- /dev/null +++ b/pipeline/alleleexpression.config @@ -0,0 +1,12 @@ +/* +* ------------------------------------------------- +* nfcore/alleleexpression custom profile Nextflow config file +* ------------------------------------------------- +* Config options for custom environments. +* Cluster-specific config options should be saved +* in the conf/pipeline/alleleexpression folder and imported +* under a profile name here. +*/ + +profiles { +} diff --git a/pipeline/cellpainting.config b/pipeline/cellpainting.config new file mode 100644 index 000000000..1afdb902a --- /dev/null +++ b/pipeline/cellpainting.config @@ -0,0 +1,12 @@ +/* +* ------------------------------------------------- +* nfcore/cellpainting custom profile Nextflow config file +* ------------------------------------------------- +* Config options for custom environments. +* Cluster-specific config options should be saved +* in the conf/pipeline/cellpainting folder and imported +* under a profile name here. +*/ + +profiles { +} diff --git a/pipeline/diseasemodulediscovery.config b/pipeline/diseasemodulediscovery.config new file mode 100644 index 000000000..18674e1e8 --- /dev/null +++ b/pipeline/diseasemodulediscovery.config @@ -0,0 +1,12 @@ +/* +* ------------------------------------------------- +* nfcore/diseasemodulediscovery custom profile Nextflow config file +* ------------------------------------------------- +* Config options for custom environments. +* Cluster-specific config options should be saved +* in the conf/pipeline/diseasemodulediscovery folder and imported +* under a profile name here. +*/ + +profiles { +} diff --git a/pipeline/longraredisease.config b/pipeline/longraredisease.config new file mode 100644 index 000000000..b6ff1a01c --- /dev/null +++ b/pipeline/longraredisease.config @@ -0,0 +1,12 @@ +/* +* ------------------------------------------------- +* nfcore/longraredisease custom profile Nextflow config file +* ------------------------------------------------- +* Config options for custom environments. +* Cluster-specific config options should be saved +* in the conf/pipeline/longraredisease folder and imported +* under a profile name here. +*/ + +profiles { +} diff --git a/pipeline/lsmquant.config b/pipeline/lsmquant.config new file mode 100644 index 000000000..353ab3469 --- /dev/null +++ b/pipeline/lsmquant.config @@ -0,0 +1,12 @@ +/* +* ------------------------------------------------- +* nfcore/lsmquant custom profile Nextflow config file +* ------------------------------------------------- +* Config options for custom environments. +* Cluster-specific config options should be saved +* in the conf/pipeline/lsmquant folder and imported +* under a profile name here. +*/ + +profiles { +} diff --git a/pipeline/panoramaseq.config b/pipeline/panoramaseq.config new file mode 100644 index 000000000..1d9c0efcc --- /dev/null +++ b/pipeline/panoramaseq.config @@ -0,0 +1,12 @@ +/* +* ------------------------------------------------- +* nfcore/panoramaseq custom profile Nextflow config file +* ------------------------------------------------- +* Config options for custom environments. +* Cluster-specific config options should be saved +* in the conf/pipeline/panoramaseq folder and imported +* under a profile name here. +*/ + +profiles { +} diff --git a/pipeline/proteinannotator.config b/pipeline/proteinannotator.config new file mode 100644 index 000000000..bc5ca1422 --- /dev/null +++ b/pipeline/proteinannotator.config @@ -0,0 +1,12 @@ +/* +* ------------------------------------------------- +* nfcore/proteinannotator custom profile Nextflow config file +* ------------------------------------------------- +* Config options for custom environments. +* Cluster-specific config options should be saved +* in the conf/pipeline/proteinannotator folder and imported +* under a profile name here. +*/ + +profiles { +} diff --git a/pipeline/rarevariantburden.config b/pipeline/rarevariantburden.config new file mode 100644 index 000000000..e6a1bbc3f --- /dev/null +++ b/pipeline/rarevariantburden.config @@ -0,0 +1,12 @@ +/* +* ------------------------------------------------- +* nfcore/rarevariantburden custom profile Nextflow config file +* ------------------------------------------------- +* Config options for custom environments. +* Cluster-specific config options should be saved +* in the conf/pipeline/rarevariantburden folder and imported +* under a profile name here. +*/ + +profiles { +} diff --git a/pipeline/ribomsqc.config b/pipeline/ribomsqc.config new file mode 100644 index 000000000..257b0a0b6 --- /dev/null +++ b/pipeline/ribomsqc.config @@ -0,0 +1,12 @@ +/* +* ------------------------------------------------- +* nfcore/ribomsqc custom profile Nextflow config file +* ------------------------------------------------- +* Config options for custom environments. +* Cluster-specific config options should be saved +* in the conf/pipeline/ribomsqc folder and imported +* under a profile name here. +*/ + +profiles { +} diff --git a/pipeline/seqsubmit.config b/pipeline/seqsubmit.config new file mode 100644 index 000000000..54b0d0674 --- /dev/null +++ b/pipeline/seqsubmit.config @@ -0,0 +1,12 @@ +/* +* ------------------------------------------------- +* nfcore/seqsubmit custom profile Nextflow config file +* ------------------------------------------------- +* Config options for custom environments. +* Cluster-specific config options should be saved +* in the conf/pipeline/seqsubmit folder and imported +* under a profile name here. +*/ + +profiles { +} diff --git a/pipeline/sopa.config b/pipeline/sopa.config new file mode 100644 index 000000000..fc2af3bb1 --- /dev/null +++ b/pipeline/sopa.config @@ -0,0 +1,12 @@ +/* +* ------------------------------------------------- +* nfcore/sopa custom profile Nextflow config file +* ------------------------------------------------- +* Config options for custom environments. +* Cluster-specific config options should be saved +* in the conf/pipeline/sopa folder and imported +* under a profile name here. +*/ + +profiles { +} diff --git a/pipeline/variantprioritization.config b/pipeline/variantprioritization.config new file mode 100644 index 000000000..7efe9689c --- /dev/null +++ b/pipeline/variantprioritization.config @@ -0,0 +1,12 @@ +/* +* ------------------------------------------------- +* nfcore/variantprioritization custom profile Nextflow config file +* ------------------------------------------------- +* Config options for custom environments. +* Cluster-specific config options should be saved +* in the conf/pipeline/variantprioritization folder and imported +* under a profile name here. +*/ + +profiles { +} diff --git a/pipeline/viralmetagenome.config b/pipeline/viralmetagenome.config new file mode 100644 index 000000000..16f30a053 --- /dev/null +++ b/pipeline/viralmetagenome.config @@ -0,0 +1,12 @@ +/* +* ------------------------------------------------- +* nfcore/viralmetagenome custom profile Nextflow config file +* ------------------------------------------------- +* Config options for custom environments. +* Cluster-specific config options should be saved +* in the conf/pipeline/viralmetagenome folder and imported +* under a profile name here. +*/ + +profiles { +}