TW-ICE2017 aka. GlacierFront protist data from IOPAN to Darwin Core

[cnrdh]

    75 TW-ICE2017-handnet.tsv
   347 TW-ICE2017-phytoplankton.tsv 

This and other 2017 data is already published: https://doi.org/10.21334/npolar.2019.56c2cd62

[filchos]

@cnrdh could you explain more explicitly what this issue is about?

Especially: Is there any data I can use? Where? Is there anything that I should do? What?

[cnrdh]

Yes, track down the complete (>=1015 lines) original IOPAN legacy data ie. GlacierFront2017/TW-ICE2017 phytoplankton & handnet. The first 3 lines should look like this:

~/npolar/marine-db$ head -n3 /home/conrad/npolar/marine-db/data/deposit/2017/GlacierFront2017/TW-ICE2017-phytoplankton.tsv

"name"	"no"	"station "	"depth"	"data"	"V-taken [ml]"	"Vth filtered [L]"	"V bottle [ml]"	"Class\Phyllum"	"takson"	"add"	"K"	"N"	"fields"	"magn"	"cells in chamb"	"cells in V bottle [ml]"	" abundance"	"gear"	"foto"	"who"
"GlacierFront"	25	"Cc3 "	10	2017	50	1	1000	"Prymnesiophyceae"	"Algirosphaera sp."		16635.11	1	364	60	45.7008516483517	914.017032967033	914.017032967033	"niskin"		"AT"
"GlacierFront"	25	"Cc3 "	10	2017	50	1	1000	"Euglenoidea"	"Eutreptiella sp."		16635.11	50	16	60	51984.71875	1039694.375	1039694.375	"niskin"		"AT"

[filchos]

Can you deliver this dataset as NDJSON following DwC?

[cnrdh]

No, since I don't have the complete original data.

Update: Yes, checked with AW and the published dataset has a misleading title and also other samples from 2017…

[cnrdh]

The following PHT fieldNumber not found:

["GlacierFront2017","PHT-031","CpS1",1,1,null]

Handnet file (74 lines) lacks fileldNumber.
No handnet in sample log either, except these with shared metadata:

"UNDEFINED"
"MOSJNUT-070"
"MOSJNUT-069"
"MOSJNUT-068"

[cnrdh]

Puh, a little involving to smosh together samling events based on station.